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Clc02G00710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G00710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosome assembly factor mrt4
Genome locationClcChr02:640106..641627
RNA-Seq ExpressionClc02G00710
SyntenyClc02G00710
Gene Ontology termsGO:0000956 - nuclear-transcribed mRNA catabolic process (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
InterPro domainsIPR001790 - Ribosomal protein L10P
IPR043141 - Ribosomal protein L10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157470.1 mRNA turnover protein 4 homolog [Momordica charantia]5.0e-2172.09Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKS+SR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

XP_022933518.1 mRNA turnover protein 4 homolog [Cucurbita moschata]2.3e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

XP_022969955.1 mRNA turnover protein 4 homolog [Cucurbita maxima]2.3e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

XP_023529350.1 mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]2.3e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

XP_038902849.1 mRNA turnover protein 4 homolog [Benincasa hispida]2.9e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMV+LIRQAVENYNSIFVFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

TrEMBL top hitse value%identityAlignment
A0A0A0KNA7 Uncharacterized protein1.9e-1877.42Show/hide
Query:  KTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSRQVVFPDFCII
        K ++KGR+HKKSMV+ IRQ VENYNS+FVFTVENMRNLKFKELRE LKS+SRQV+  +FCII
Subjt:  KTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSRQVVFPDFCII

A0A4S4DS10 Ribosome assembly factor mrt41.1e-1655.43Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLV------EYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRPG + +         L       + G  +TLSKTKKKGR HK+S+V+ IR+ +E YNS++VF+ ENMRNLKFKE R+ LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLV------EYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

A0A6J1DT71 Ribosome assembly factor mrt42.4e-2172.09Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKS+SR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

A0A6J1F4Z2 Ribosome assembly factor mrt41.1e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

A0A6J1I1E2 Ribosome assembly factor mrt41.1e-2173.26Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHKKSMVDLIRQAVENYNSI+VFTVENMRNLKFKELRE LKSSSR
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR

SwissProt top hitse value%identityAlignment
A4FV84 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS

Q6FJ04 Ribosome assembly factor mrt43.4e-0440.82Show/hide
Query:  VTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELRE
        VTL++T KKGRE+K+ + D +R+A++ Y  +FV  ++++R    +E+RE
Subjt:  VTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELRE

Q7S302 Ribosome assembly factor mrt43.4e-0440.82Show/hide
Query:  LSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHL
        L++  KK RE K+ + + IR+ + NY   FVF+++NMRN   K++R+ L
Subjt:  LSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHL

Q9D0I8 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS

Q9UKD2 mRNA turnover protein 4 homolog5.6e-0736.9Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS
        MPKSKRD+                      V+L+KT KKG E K+++++ +R+ V+ Y  +F+F+V NMRN K K++R   K S
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSS

Arabidopsis top hitse value%identityAlignment
AT1G25260.1 Ribosomal protein L10 family protein5.2e-1650Show/hide
Query:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR
        MPKSKRDRP                     VTLSKTKKKGREHK+ +V+ IR+AVE Y+S++VF+ ENMRN+KFKE R+  + + +
Subjt:  MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAAGTCGAAGCGTGATAGACCAGGTCCGAACCTCACACAGTACAAGGAGGGATTGTTCAAGGTTCTTGTTGAATATGGGTTAACGGTTACTTTATCAAAAACCAA
GAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGT
TTAAGGAACTCAGGGAGCATCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGACTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAAGTCGAAGCGTGATAGACCAGGTCCGAACCTCACACAGTACAAGGAGGGATTGTTCAAGGTTCTTGTTGAATATGGGTTAACGGTTACTTTATCAAAAACCAA
GAAGAAAGGAAGGGAACACAAGAAATCAATGGTGGATCTGATCAGGCAGGCTGTGGAAAATTACAACTCAATTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGT
TTAAGGAACTCAGGGAGCATCTGAAGTCATCTAGCAGGCAAGTTGTATTTCCTGACTTCTGTATTATTTATTTGCTACATCATTTCAAATATTGA
Protein sequenceShow/hide protein sequence
MPKSKRDRPGPNLTQYKEGLFKVLVEYGLTVTLSKTKKKGREHKKSMVDLIRQAVENYNSIFVFTVENMRNLKFKELREHLKSSSRQVVFPDFCIIYLLHHFKY