CuGenDBv2

Gene ID	Clc02G01240
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Genome location	ClcChr02:1289153..1289830
RNA-Seq Expression	Clc02G01240
Synteny	Clc02G01240
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.6e-70

86.13

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIV----RRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAA
        MASPTLITP TSKSQ    PLKPKS+I+AAA+TT      RRR+FLSLTASVLAPS VLFP +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIV----RRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAA

Query:  VAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRE+SNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

6.2e-77

92.31

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSPALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_008455335.1 PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]

1.2e-77

92.9

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSPALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

3.3e-70

87.21

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRE+SNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

7.3e-78

94.08

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQTPF PLKPKSTISAAA+ T VRRRDFLSLTASVLAPS VLFPQSPALA+SD+EYVKDTSEVIGKVR TITMDRNDPNVAAAVAEL
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

3.0e-77

92.31

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRR+FLSLTASVLAPS VLFPQSPALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

6.0e-78

92.9

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSPALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

6.0e-78

92.9

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PF PLKPKSTISAA +T  VRRRDFLSL+ASVLAPS VLFPQSPALAASD+EYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RE+SNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.6e-70

87.21

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRE+SNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.6e-70

87.21

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Query:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ    PLKPKS+ISAAA+TT     RRR+FLSLTASVLAPS VLFP +PALA+SDEEYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQTPFFPLKPKSTISAAASTT---IVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRE+SNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

9.6e-49

75.37

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Query:  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSG
        RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.9e-04

23.47

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Query:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

6.8e-50

75.37

Show/hide

Query:  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSG
        RRDFLSL  T+++L  S+     +P  AA DEEY+KDTS VI KVR+T++M + DPNVA AVAELRE SNSWVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RRDFLSL--TASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

1.4e-05

23.47

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Query:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  + +++     +    +E+   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRETSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACCATTGTCCG
CCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAAGGACACGA
GCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGGTGGCTAAG
TACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCGCCGATTCC
GGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

Show/hide mRNA sequence

AGATGATAAGCACACGTGTCAAACACCCAATTCCCCAAATTTCCTAACTAAAAATCCCTCTTCACATTTCATTTGATTTCCCCTTCTCCCCTTCCAAAATCCCAATTTCC
CCAAAATCATGGCTTCCCCAACACTCATAACCCCTTGTACTTCCAAATCTCAAACTCCCTTCTTCCCTCTCAAACCCAAATCCACCATTTCCGCCGCCGCATCAACCACC
ATTGTCCGCCGCCGCGACTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTTGGTTCTGTTCCCTCAATCGCCGGCACTGGCGGCGTCGGACGAGGAGTACGTGAA
GGACACGAGCGAGGTGATAGGGAAGGTCAGAACGACAATCACAATGGACAGAAACGACCCGAATGTGGCGGCGGCAGTGGCGGAGCTTCGAGAAACCTCGAATTCTTGGG
TGGCTAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGACCGACGGCG
CCGATTCCGGCGAAGAGGAAGGCGAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGAAAATTATGTGAGACATTTTTCATTCTTTTTCT
CTTTCTATTTTTTTTTTT

Protein sequence

Show/hide protein sequence

MASPTLITPCTSKSQTPFFPLKPKSTISAAASTTIVRRRDFLSLTASVLAPSLVLFPQSPALAASDEEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRETSNSWVAK
YRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Clc02G01240 (gene) of Watermelon (cordophanus) v2 genome