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Clc02G01680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G01680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr02:1579775..1580774
RNA-Seq ExpressionClc02G01680
SyntenyClc02G01680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031624.1 uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa]6.3e-2874.51Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN
        MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRPAL AI+ED +GA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN

Query:  YW
        YW
Subjt:  YW

XP_008455392.1 PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo]2.4e-3575Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN
        MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+PAL AI+ED KGA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN

Query:  YWTNSMAMAMPVFSSVPFMF
        YW NSMAMAMP FS VP MF
Subjt:  YWTNSMAMAMPVFSSVPFMF

XP_022136180.1 uncharacterized protein LOC111007936 [Momordica charantia]1.6e-2357.48Show/hide
Query:  MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPALAAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKS
        M FFS+FGSC RS A VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRPAL+AILED+  A   +  V KSG++K EKK SGR+ R   KS
Subjt:  MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPALAAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKS

Query:  SSYNGRDNYWTNSMAMAMPVFSSVPFM
         SY+GRD+YWTNS  +AMP  S  PFM
Subjt:  SSYNGRDNYWTNSMAMAMPVFSSVPFM

XP_031745001.1 uncharacterized protein LOC116405215 [Cucumis sativus]8.8e-3069.75Show/hide
Query:  SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNY
        SF SKFGSCWRS AVAP      AV +EVK EQ V   RSSKSESAAHWRPALAAI+EDS GA    KKS K+K EKKTSG QG   TKS   Y+GRDNY
Subjt:  SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNY

Query:  WTNSMAMAMPVFSSVPFMF
        WTN+MAMAMP FS VP MF
Subjt:  WTNSMAMAMPVFSSVPFMF

XP_038888636.1 uncharacterized protein LOC120078432 [Benincasa hispida]7.4e-4586.44Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYW
        MSFFSKF SCWRS  VAPRVYLDGAVAEEVKEQSV  LRSSKSESAAHWRPALA ILEDSKG RSPVKKSGKKKPEKK SGRQ RL TKS S +GRDNYW
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYW

Query:  TNSMAMAMPVFSSVPFMF
        TNS+AMAMPVFS VP MF
Subjt:  TNSMAMAMPVFSSVPFMF

TrEMBL top hitse value%identityAlignment
A0A0A0K279 Uncharacterized protein4.3e-2268.32Show/hide
Query:  SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNY
        SF SKFGSCWRS AVAP      AV +EVK EQ V   RSSKSESAAHWRPALAAI+EDS GA    KKS K+K EKKTSG QG   TKS   Y+GRDNY
Subjt:  SFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDNY

Query:  W
        W
Subjt:  W

A0A1S3C217 uncharacterized protein LOC1034955641.2e-3575Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN
        MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+PAL AI+ED KGA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN

Query:  YWTNSMAMAMPVFSSVPFMF
        YW NSMAMAMP FS VP MF
Subjt:  YWTNSMAMAMPVFSSVPFMF

A0A5D3C9U7 Uncharacterized protein3.0e-2874.51Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN
        MSFFSKF SCWRS AVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRPAL AI+ED +GA+S  KKS +KKPEKKTSGRQGR  TKS   Y+GRD+
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVK-EQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKS-SSYNGRDN

Query:  YW
        YW
Subjt:  YW

A0A6J1C360 uncharacterized protein LOC1110079367.8e-2457.48Show/hide
Query:  MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPALAAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKS
        M FFS+FGSC RS A VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRPAL+AILED+  A   +  V KSG++K EKK SGR+ R   KS
Subjt:  MSFFSKFGSCWRSTA-VAPRVYLDGAVAEE------VKEQSVEMLRSSKSESAAHWRPALAAILEDSKGA---RSPVKKSGKKKPEKKTSGRQGRLKTKS

Query:  SSYNGRDNYWTNSMAMAMPVFSSVPFM
         SY+GRD+YWTNS  +AMP  S  PFM
Subjt:  SSYNGRDNYWTNSMAMAMPVFSSVPFM

A0A6J1HXF5 uncharacterized protein LOC1114683537.5e-1956.78Show/hide
Query:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYW
        M  FSK GS  R  AVA RVY         +EQS+E + SSK  SA+HW+PAL  ILEDSKG RSPVKKSG+K   KKTS +Q R  TKS    GRD YW
Subjt:  MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYW

Query:  TNSMAMAMPVFSSVPFMF
         +S  +AMP F+S PFMF
Subjt:  TNSMAMAMPVFSSVPFMF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTTTTTCAAAGTTCGGTTCTTGTTGGCGGTCGACGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCCGAGGAGGTCAAGGAGCAGAGCGTCGAGAT
GCTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGGCGTTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGTTCGCCGGTGAAGAAATCCGGCAAAAAGA
AGCCGGAGAAGAAAACGTCCGGCCGGCAAGGCAGGCTGAAGACCAAGTCGTCTAGTTATAATGGCAGAGATAATTACTGGACGAACTCAATGGCGATGGCGATGCCAGTG
TTCTCGTCAGTGCCATTCATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
CTCGTTTTGCTTTTCGCGATTATGTCATTTTTTTCAAAGTTCGGTTCTTGTTGGCGGTCGACGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCCGAGGAGGT
CAAGGAGCAGAGCGTCGAGATGCTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGGCGTTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGTTCGCCGG
TGAAGAAATCCGGCAAAAAGAAGCCGGAGAAGAAAACGTCCGGCCGGCAAGGCAGGCTGAAGACCAAGTCGTCTAGTTATAATGGCAGAGATAATTACTGGACGAACTCA
ATGGCGATGGCGATGCCAGTGTTCTCGTCAGTGCCATTCATGTTTTGAAGGTAAATTTGGATGATCGAAAAATATCATACACAGTTGGTTGTCG
Protein sequenceShow/hide protein sequence
MSFFSKFGSCWRSTAVAPRVYLDGAVAEEVKEQSVEMLRSSKSESAAHWRPALAAILEDSKGARSPVKKSGKKKPEKKTSGRQGRLKTKSSSYNGRDNYWTNSMAMAMPV
FSSVPFMF