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Clc02G01900 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G01900
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVascular-related unknown protein 1
Genome locationClcChr02:1728245..1729169
RNA-Seq ExpressionClc02G01900
SyntenyClc02G01900
Gene Ontology termsGO:0010089 - xylem development (biological process)
InterPro domainsIPR039280 - VASCULAR-RELATED UNKNOWN PROTEIN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455422.1 PREDICTED: uncharacterized protein LOC103495585 [Cucumis melo]5.4e-6375.13Show/hide
Query:  NNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VPNKKT
        NNA  +  D PPENSS    AAGAEEQEESGWTDYLEDYFNSE +ERESSFLCSSIGSCSNWD  +NIS  NYDIN N NVG V +D       +  KKT
Subjt:  NNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VPNKKT

Query:  RTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN
        RTQKIFE DDSLQDTATSPIHSPKV D K+RTS +NPRF+D HIT+  NSTGSGRQ+GKYYSNKEK VYSAEKKGLCL P SMLLNYHN
Subjt:  RTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN

XP_011658705.1 vascular-related unknown protein 1 [Cucumis sativus]8.9e-5870.98Show/hide
Query:  MEKN-NAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VP
        ME N +A  +  D  PENSS    A   EEQEESGWTDYLEDYFNSE +ERESSFLCSSIGSCSNWD  +NIS  +YDIN N N+G V +D       + 
Subjt:  MEKN-NAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VP

Query:  NKKTRTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN
         KKTRTQKIFE DDSLQDTATSPIHSPKV D K+RTS +N  F+D HIT+  NSTGSGRQ+GKYYSNKEKGVYSAEKKGLCLFP SMLLNYHN
Subjt:  NKKTRTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN

XP_022136166.1 uncharacterized protein LOC111007924 [Momordica charantia]5.3e-3452.08Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSSV--AAGAEEQEESGWTDYLEDYF-NSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTNVGKVIFDVP------NKK
        MEKN  A     PP E  S+++     G  E+EESGWTDYLEDYF +S+IERE SFLCSSIGSCS+ D N +         +VG+V  D P       K 
Subjt:  MEKNNAAAEGVDPPPENSSSSSV--AAGAEEQEESGWTDYLEDYF-NSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTNVGKVIFDVP------NKK

Query:  TRTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSA-----EKKGLCLFPLSMLLNY
        TRTQKIF+DDSL+DTATSP+HSPKV D K++T H N +F+DH   M+  S GS       YS  EKGV +A     +++GLCLFP SMLL+Y
Subjt:  TRTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSA-----EKKGLCLFPLSMLLNY

XP_022930798.1 vascular-related unknown protein 1-like [Cucurbita moschata]2.4e-2661.83Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINN-----TNVGKVIFDVPN----K
        M+K NAAA GVDPPPE SSS+  A GAEE  ESGWT+YLEDY  SEIER+SSFL CSS GSCS WD  IS+ N +  N      +VG+VI D PN    K
Subjt:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINN-----TNVGKVIFDVPN----K

Query:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL
        KT TQ+IF+DDSL+DTATSP+ +PKV D  +
Subjt:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL

XP_038888852.1 vascular-related unknown protein 1-like [Benincasa hispida]5.9e-7077.66Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSS---VAAGAEEQEESGWTDYLEDYFNSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTN-VGKVIFDVPN----KKT
        MEKNNA AEG D PPENSS+SS    AAGAEEQEESGWTDYLEDYF+S    ESS+LCSSIGSCSNWDHNIS+ NYDIN TN +GK+IFDVPN    KKT
Subjt:  MEKNNAAAEGVDPPPENSSSSS---VAAGAEEQEESGWTDYLEDYFNSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTN-VGKVIFDVPN----KKT

Query:  RTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN
        RTQKIFEDDSLQDTATSPIHSPKV D K++TSH+NPRF+     ++TN TGS RQLGKYYS+KE GVYS+EKKGLCLFPLSMLLNYHN
Subjt:  RTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN

TrEMBL top hitse value%identityAlignment
A0A0A0K3L1 Uncharacterized protein4.3e-5870.98Show/hide
Query:  MEKN-NAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VP
        ME N +A  +  D  PENSS    A   EEQEESGWTDYLEDYFNSE +ERESSFLCSSIGSCSNWD  +NIS  +YDIN N N+G V +D       + 
Subjt:  MEKN-NAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VP

Query:  NKKTRTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN
         KKTRTQKIFE DDSLQDTATSPIHSPKV D K+RTS +N  F+D HIT+  NSTGSGRQ+GKYYSNKEKGVYSAEKKGLCLFP SMLLNYHN
Subjt:  NKKTRTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN

A0A1S3C0F7 uncharacterized protein LOC1034955852.6e-6375.13Show/hide
Query:  NNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VPNKKT
        NNA  +  D PPENSS    AAGAEEQEESGWTDYLEDYFNSE +ERESSFLCSSIGSCSNWD  +NIS  NYDIN N NVG V +D       +  KKT
Subjt:  NNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSE-IERESSFLCSSIGSCSNWD--HNISDLNYDIN-NTNVGKVIFD-------VPNKKT

Query:  RTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN
        RTQKIFE DDSLQDTATSPIHSPKV D K+RTS +NPRF+D HIT+  NSTGSGRQ+GKYYSNKEK VYSAEKKGLCL P SMLLNYHN
Subjt:  RTQKIFE-DDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN

A0A6J1C2S1 uncharacterized protein LOC1110079242.5e-3452.08Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSSV--AAGAEEQEESGWTDYLEDYF-NSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTNVGKVIFDVP------NKK
        MEKN  A     PP E  S+++     G  E+EESGWTDYLEDYF +S+IERE SFLCSSIGSCS+ D N +         +VG+V  D P       K 
Subjt:  MEKNNAAAEGVDPPPENSSSSSV--AAGAEEQEESGWTDYLEDYF-NSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTNVGKVIFDVP------NKK

Query:  TRTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSA-----EKKGLCLFPLSMLLNY
        TRTQKIF+DDSL+DTATSP+HSPKV D K++T H N +F+DH   M+  S GS       YS  EKGV +A     +++GLCLFP SMLL+Y
Subjt:  TRTQKIFEDDSLQDTATSPIHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSA-----EKKGLCLFPLSMLLNY

A0A6J1ESI7 Uncharacterized protein1.1e-2661.83Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINN-----TNVGKVIFDVPN----K
        M+K NAAA GVDPPPE SSS+  A GAEE  ESGWT+YLEDY  SEIER+SSFL CSS GSCS WD  IS+ N +  N      +VG+VI D PN    K
Subjt:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINN-----TNVGKVIFDVPN----K

Query:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL
        KT TQ+IF+DDSL+DTATSP+ +PKV D  +
Subjt:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL

A0A6J1JN61 Uncharacterized protein1.3e-2561.83Show/hide
Query:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINNT-----NVGKVIFDVPN----K
        M+K NA   GVDPPPE SSS+  A GAEE EESGWT+YLEDY  SEIER+SSFL CSS GSCS WD  IS+ N +  N      +VG+VI D PN    K
Subjt:  MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFL-CSSIGSCSNWDHNISDLNYDINNT-----NVGKVIFDVPN----K

Query:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL
        KT TQ IF+DDSL+DTATSP+ +PKV DF +
Subjt:  KTRTQKIFEDDSLQDTATSPIHSPKVGDFKL

SwissProt top hitse value%identityAlignment
Q9LSZ3 Vascular-related unknown protein 11.5e-0728.91Show/hide
Query:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN
        E+N+   + +D    +  S     G + QEESGWT YL+D+ N            + +   S L +S    S+   H  S  ++ +N     K+ F    
Subjt:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN

Query:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK-LRTSHQNPRFEDHHIT---MVTNSTGSG-----------------RQLGKYYSNKEKGVYSAEKKGLC
         + RT+KI EDDSL+DTA+SP++SPKV  F+ ++T    PR  + +++   ++ N  G G                 R L    +N          +GLC
Subjt:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK-LRTSHQNPRFEDHHIT---MVTNSTGSG-----------------RQLGKYYSNKEKGVYSAEKKGLC

Query:  LFPLSMLLNYH
        + P+SML N++
Subjt:  LFPLSMLLNYH

Arabidopsis top hitse value%identityAlignment
AT3G21710.1 unknown protein1.7e-0633.59Show/hide
Query:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN
        E+N+   + +D    +  S     G + QEESGWT YL+D+ N            + +   S L +S    S+   H  S  ++ +N     K+ F    
Subjt:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN

Query:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK
         + RT+KI EDDSL+DTA+SP++SPKV  F+
Subjt:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK

AT3G21710.2 unknown protein1.1e-0828.91Show/hide
Query:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN
        E+N+   + +D    +  S     G + QEESGWT YL+D+ N            + +   S L +S    S+   H  S  ++ +N     K+ F    
Subjt:  EKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNS-----------EIERESSFLCSSIGSCSN-WDHNISDLNYDINNTNVGKVIFDVPN

Query:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK-LRTSHQNPRFEDHHIT---MVTNSTGSG-----------------RQLGKYYSNKEKGVYSAEKKGLC
         + RT+KI EDDSL+DTA+SP++SPKV  F+ ++T    PR  + +++   ++ N  G G                 R L    +N          +GLC
Subjt:  KKTRTQKIFEDDSLQDTATSPIHSPKVGDFK-LRTSHQNPRFEDHHIT---MVTNSTGSG-----------------RQLGKYYSNKEKGVYSAEKKGLC

Query:  LFPLSMLLNYH
        + P+SML N++
Subjt:  LFPLSMLLNYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAACAACGCCGCCGCTGAAGGTGTTGATCCCCCGCCGGAAAATTCCTCCTCCTCCTCCGTGGCCGCTGGAGCCGAAGAGCAAGAAGAGAGTGGTTGGACTGA
TTACTTGGAGGATTATTTCAATTCAGAAATTGAGAGAGAAAGCAGTTTTTTGTGTTCAAGTATTGGGAGTTGTTCAAATTGGGATCATAATATTTCAGATCTCAATTATG
ATATTAATAATACCAATGTTGGGAAAGTGATATTTGATGTCCCAAACAAGAAAACAAGAACTCAGAAGATTTTTGAAGATGATTCCTTACAAGATACAGCTACTTCTCCT
ATTCATAGTCCAAAAGTTGGTGATTTCAAACTGAGAACATCCCATCAAAATCCGAGGTTTGAGGATCATCATATCACAATGGTCACTAATTCTACGGGAAGTGGAAGGCA
ATTGGGGAAATATTATTCAAACAAAGAAAAAGGTGTGTATTCAGCTGAGAAAAAAGGGTTGTGTTTGTTTCCTTTGTCCATGCTACTTAATTACCATAATTGA
mRNA sequenceShow/hide mRNA sequence
CAACTTCTCCCTTTCTTAAACTCTCATCTCTCCCTCTCTCCTCTCTATTCTTTTCATGGAGAAGAACAACGCCGCCGCTGAAGGTGTTGATCCCCCGCCGGAAAATTCCT
CCTCCTCCTCCGTGGCCGCTGGAGCCGAAGAGCAAGAAGAGAGTGGTTGGACTGATTACTTGGAGGATTATTTCAATTCAGAAATTGAGAGAGAAAGCAGTTTTTTGTGT
TCAAGTATTGGGAGTTGTTCAAATTGGGATCATAATATTTCAGATCTCAATTATGATATTAATAATACCAATGTTGGGAAAGTGATATTTGATGTCCCAAACAAGAAAAC
AAGAACTCAGAAGATTTTTGAAGATGATTCCTTACAAGATACAGCTACTTCTCCTATTCATAGTCCAAAAGTTGGTGATTTCAAACTGAGAACATCCCATCAAAATCCGA
GGTTTGAGGATCATCATATCACAATGGTCACTAATTCTACGGGAAGTGGAAGGCAATTGGGGAAATATTATTCAAACAAAGAAAAAGGTGTGTATTCAGCTGAGAAAAAA
GGGTTGTGTTTGTTTCCTTTGTCCATGCTACTTAATTACCATAATTGAGATGTAATTTAAGCATAATAATCATTAAAATCTCTATGTAACTCAACTCTCTCTCTCTCTTG
ATCTCTCTCAAACTAATTGGTATTATAATCCATTATTATTCTCTCTCTTTGTCCTCGTTTA
Protein sequenceShow/hide protein sequence
MEKNNAAAEGVDPPPENSSSSSVAAGAEEQEESGWTDYLEDYFNSEIERESSFLCSSIGSCSNWDHNISDLNYDINNTNVGKVIFDVPNKKTRTQKIFEDDSLQDTATSP
IHSPKVGDFKLRTSHQNPRFEDHHITMVTNSTGSGRQLGKYYSNKEKGVYSAEKKGLCLFPLSMLLNYHN