; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G02490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G02490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationClcChr02:2277289..2279564
RNA-Seq ExpressionClc02G02490
SyntenyClc02G02490
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]3.3e-7197.93Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]6.7e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]1.4e-6995.86Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]4.1e-6994.48Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]2.3e-72100Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein1.6e-7197.93Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284403.2e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein3.2e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like6.7e-7095.86Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like2.0e-6994.48Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284402.2e-4669.17Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV
        VDKWGR+E    A+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV

Q97W73 Single-stranded DNA binding protein Ssb8.1e-0429.36Show/hide
Query:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR
        KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG +  T        +K G  V + NA    FKG ++L      +
Subjt:  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR

Query:  VEVAEPANF
        +  A    F
Subjt:  VEVAEPANF

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.8e-4368.38Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.8e-4368.38Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein3.3e-4569.4Show/hide
Query:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        DKWGRVEV EPA+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein3.6e-4772.59Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+E  EPA+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.6e-4769.17Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV
        VDKWGR+E    A+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTGGTGAG
TTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCTCGCCCTCAACAATTAACTCGAATCTCTGAATGTCTGGTGGGTGATGAGACCGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGGTCAATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGTTGCGGAACCAGCCAACTTCGAGGTTAAAGAGGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
CATATTCTAAAACCCAATCCGAAAGATTCCCCAAATGTGAGTGAAACGCGAAATTAAATTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGATTTCATTCTCCATTTTCA
CGTTGCACTTTCATCGGCAACAGTGTTTCGTTCCGATACTTTGGATTTCCATGGCGACGCCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAA
GAGCTTAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTGGTGAGTTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCTCGCCC
TCAACAATTAACTCGAATCTCTGAATGTCTGGTGGGTGATGAGACCGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGA
CCCTGCGGAATGCAAAGATTGACATGTTCAAAGGGTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCGGAACCAGCCAACTTCGAGGTTAAAGAGGAC
AACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGAGATCAAATTATGCAATGTTAATTATCATGGATTTCCTTTCCTATTGTGTGGTGGACTGCTAT
TTATAACTGGTATACAGTTTCTATATGGCAACACAAATCTTGCTGAGGGTAATATAAGTTGATTATTGCTGTGCCTACTAACTTCTACATGCTTAATTTGGATCTGATGT
GATTAAGATCTGGGAAGGCAGAGTGCAAATGTTACTTTCTCGTCTTATTATTTGGAAAAGTAAATAGAAGGTTTTACCAATGTTCCTTCGTTTTGGTGCCCTATTTATAT
AAATATTGTGATATTCAGCTAACTTGCTCAGTTATTTACCTGACAAAAGGTGCACTTTGCATTCATGGAAATCCAACTCTTATCAATTTGCT
Protein sequenceShow/hide protein sequence
MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE