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Clc02G02580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G02580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich protein-like
Genome locationClcChr02:2338847..2339375
RNA-Seq ExpressionClc02G02580
SyntenyClc02G02580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645721.1 hypothetical protein Csa_020383 [Cucumis sativus]1.7e-1050.6Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTA-RDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCC
        M+S+AFI LGLLFA V+L   E   VTA  D+K NEA  +  E++DV+ H +GG  A +LA+C H C +GCC C  G C++CC
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTA-RDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCC

XP_004144531.1 glycine-rich protein [Cucumis sativus]1.3e-3175.25Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPN
        MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLAECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPN
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPN

Query:  N
        N
Subjt:  N

XP_038888333.1 glycine-rich protein-like isoform X1 [Benincasa hispida]7.4e-3884.85Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN
        MSS+AFIFLGLLFAIVVLFSSEEVTV ARDVKF EAMME GEVDDVERH  GGGHARNLAECLHGC  GCC C RGRCIRCCS A EAVD +PQ KPNN
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN

XP_038888334.1 glycine-rich protein-like isoform X2 [Benincasa hispida]1.8e-3684.85Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN
        MSS+AFIFLGLLFAIVVLFSSEEVTV ARDVKF EAMME GEVDDVERH  GGGHARNLAECLHGC  GCC C RGRCIRCCS A EAVD +PQ KPNN
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN

XP_038888674.1 glycine-rich protein-like [Benincasa hispida]1.1e-0952.58Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME--NGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVR-GRCIRCCSSADEAVDGEP
        MSS+AFIFLG LF +VVL SSEEVT  A D+K   +AMME   G  +DV+R    G H          C  GCCG    G C RCCS A EAVD EP
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME--NGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVR-GRCIRCCSSADEAVDGEP

TrEMBL top hitse value%identityAlignment
A0A0A0K5A1 Uncharacterized protein6.5e-3275.25Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPN
        MSS++FI LGLLFA VVLFSSE +TVTARD K  EA ME GEVD+VERH  GG H+RNLAECLHGC RGCC C RGRCIRCCS A EA  VDG+PQ KPN
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEA--VDGEPQVKPN

Query:  N
        N
Subjt:  N

A0A6J1C3E0 glycine-rich protein DC7.1-like1.6e-0647.62Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMM---ENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSA--DEAVD-GEPQ
        MSS+  IFLGLLFA+VVL SSEEVT TARD+K  E +M    NG  DD   H     H R    C H                 CS A  DEAVD  E Q
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMM---ENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSA--DEAVD-GEPQ

Query:  VKPNN
         KPNN
Subjt:  VKPNN

A0A6J1C3T3 glycine-rich protein 3 short isoform-like1.7e-0841.86Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHV-------IGGGHARNLAECLHG-----------------------CARGC
        M+S+AFI LGLLFA+VVL SS+   VTARD+K  E +ME   V+D +           GGG+ R  +    G                       C  GC
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHV-------IGGGHARNLAECLHG-----------------------CARGC

Query:  CGCVRGRCIRCCSSADEAVDGEPQVKPNN
        CG   G C RCCS A EAVD EPQ KP+N
Subjt:  CGCVRGRCIRCCSSADEAVDGEPQVKPNN

A0A6J1ESD5 glycine-rich protein DC7.1-like1.1e-0743.93Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG------HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGE
        M+S+AFI LGLLF IV+L SSEE + TAR +K   EA+ME NG+  + ++   GGG      H R+     H C  GC             SADE V+ +
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG------HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGE

Query:  PQVKPNN
        PQ KPNN
Subjt:  PQVKPNN

A0A6J1JMI7 glycine-rich protein DC7.1-like1.7e-0843.52Show/hide
Query:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG-------HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDG
        M+S+AFI LGLLFA+V+L SSEE T TAR +K   EA+ME NG+  + ++   GGG       H  +   C HGC                 SADE V+ 
Subjt:  MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVK-FNEAMME-NGEVDDVERHVIGGG-------HARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDG

Query:  EPQVKPNN
        +PQ KPNN
Subjt:  EPQVKPNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTAT
GATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCG
TCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCCAGAGCTTTCATCTTCCTTGGTCTTCTTTTCGCCATTGTCGTCCTCTTTTCCTCGGAGGAGGTAACGGTTACGGCAAGGGATGTGAAATTCAATGAAGCTAT
GATGGAAAATGGAGAAGTTGATGATGTTGAGCGCCACGTAATTGGAGGAGGCCATGCTCGAAACCTTGCCGAATGCCTCCACGGTTGCGCCCGAGGTTGTTGTGGATGCG
TCCGTGGCCGTTGCATCAGGTGCTGCAGCTCTGCTGATGAGGCTGTTGATGGAGAGCCCCAAGTGAAGCCTAATAATTAA
Protein sequenceShow/hide protein sequence
MSSRAFIFLGLLFAIVVLFSSEEVTVTARDVKFNEAMMENGEVDDVERHVIGGGHARNLAECLHGCARGCCGCVRGRCIRCCSSADEAVDGEPQVKPNN