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Clc02G03940 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G03940
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionexpansin-like A2
Genome locationClcChr02:3365432..3366315
RNA-Seq ExpressionClc02G03940
SyntenyClc02G03940
Gene Ontology termsGO:0019953 - sexual reproduction (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR007117 - Expansin, cellulose-binding-like domain
IPR036749 - Expansin, cellulose-binding-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046629.1 expansin-like A2 [Cucumis melo var. makuwa]1.8e-3197.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

QDL52562.1 expansin A9-like protein [Cucumis melo]1.4e-3188.31Show/hide
Query:  EWKKESISYYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        EW +     YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  EWKKESISYYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

XP_004153444.1 expansin-like A2 [Cucumis sativus]1.8e-3197.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

XP_016900448.1 PREDICTED: expansin-like A2 [Cucumis melo]1.8e-3197.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

XP_022952634.1 expansin-like A3 [Cucurbita moschata]2.3e-3195.59Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTEIV +DIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

TrEMBL top hitse value%identityAlignment
A0A0A0K0S3 Uncharacterized protein8.6e-3297.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

A0A1S4DWU6 expansin-like A28.6e-3297.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

A0A515EIS0 Expansin A9-like protein6.6e-3288.31Show/hide
Query:  EWKKESISYYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        EW +     YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  EWKKESISYYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

A0A5D3DIA9 Expansin-like A28.6e-3297.06Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKP PKGPLQLRFVVTSGYDGK+IWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

A0A6J1HVQ7 expansin-like A31.1e-3195.59Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTEIV +DIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

SwissProt top hitse value%identityAlignment
Q7XCL0 Expansin-like A22.8e-1962.12Show/hide
Query:  LAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWA
        L+I+ L QGGQT+IVA+D+A VG SNW +M R+YG  W T +  P GPLQ R VVT GYDGKW+WA
Subjt:  LAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWA

Q8H274 Expansin-like A31.4e-1862.12Show/hide
Query:  LAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWA
        L IK L QGGQT+I+A+D+AQVG S+W +M R YG VW   +  P GPLQ R VVT GYDGKW+WA
Subjt:  LAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWA

Q9LZT4 Expansin-like A11.2e-1968.12Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYS-NWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YL IKLL QGGQTE+V+IDIAQVG S NW YM R++GAVW T K +P G +Q RFVVT GYDGK IW++
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYS-NWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

Q9LZT5 Expansin-like A33.3e-2066.18Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTE+V IDIA VG S W YM R++GAVW T K +P G LQ +F VT GYDGK +W+K
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

Q9SVE5 Expansin-like A28.6e-2169.12Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTE+VAI IAQVG S+W YM R++GAVW T K +P G LQ RFVVT+GYDGK +W++
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

Arabidopsis top hitse value%identityAlignment
AT3G45960.1 expansin-like A32.3e-2166.18Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTE+V IDIA VG S W YM R++GAVW T K +P G LQ +F VT GYDGK +W+K
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

AT3G45960.2 expansin-like A32.3e-2166.18Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTE+V IDIA VG S W YM R++GAVW T K +P G LQ +F VT GYDGK +W+K
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

AT3G45970.1 expansin-like A18.8e-2168.12Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYS-NWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YL IKLL QGGQTE+V+IDIAQVG S NW YM R++GAVW T K +P G +Q RFVVT GYDGK IW++
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYS-NWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK

AT4G17030.1 expansin-like B15.5e-0739.39Show/hide
Query:  YYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWI
        +YLAI +L  GG  +I+A+++ Q     W  M R +GAV + + P P+G L LRF+V       WI
Subjt:  YYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWI

AT4G38400.1 expansin-like A26.1e-2269.12Show/hide
Query:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK
        YLAIKLL QGGQTE+VAI IAQVG S+W YM R++GAVW T K +P G LQ RFVVT+GYDGK +W++
Subjt:  YLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAAGGAGTCAATATCCTATTACTTAGCCATTAAATTGCTTAACCAAGG
TGGCCAAACAGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGAAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGA
AAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAAGTACGTACTTCCTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAAGGAGTCAATATCCTATTACTTAGCCATTAAATTGCTTAACCAAGG
TGGCCAAACAGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGAAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGA
AAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAAGTACGTACTTCCTGCTGACTGGAGACCTGGATTGATTTACGATAC
TGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGTGATGGACAATGGAAACGATAGATATATTTGACTGGTCTCCATCAAATAGATGTTA
TATATAAAGTTATAATATCATATAGTGTAAGAAAATGGAAAATAAAATAAGAGATGGATGGAGCAGGATGATTGTATCATAATCATTAAGTAAATAATAAAGTATATAAA
TTATTAATGATATGATATTTAGTTGTCATGGCTATGGGTTCCAATTGGATGGTCTTTTCCTCTTTAAAGCTAGTCTTGTTTTCACACCAACCAGATCTAA
Protein sequenceShow/hide protein sequence
MLNSKGFLVNTITKTCWLEWKKESISYYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKVRTSC