CuGenDBv2

Gene ID	Clc02G04350
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein translocase complex, SecE/Sec61-gamma subunit
Genome location	ClcChr02:3763506..3767778
RNA-Seq Expression	Clc02G04350
Synteny	Clc02G04350
Gene Ontology terms	GO:0006605 - protein targeting (biological process) GO:0071806 - protein transmembrane transport (biological process) GO:0090351 - seedling development (biological process) GO:0009528 - plastid inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR001901 - Protein translocase complex, SecE/Sec61-gamma subunit IPR038379 - SecE superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589021.1 hypothetical protein SDJN03_17586, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-58

74.03

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Query:  LASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFND
        + ++VY     F+  LL+SCS+MVIASALGANHIG   +P S   FHV  YNTAR  K+ IFQ L T+IS+R G H+YA RMGFNH ASGRDNQQL FND
Subjt:  LASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFND

Query:  GWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
          PPEPFFL +IKETVWGLRSL IFLAEQPSQLKYIEWPSFQSTLKTAT ALVLVALLIVALSSVDS LSYILT +LRRTS
Subjt:  GWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

XP_004144859.1 uncharacterized protein LOC101211352 isoform X2 [Cucumis sativus]

5.7e-61

81.01

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNHASGRDN-QQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVI S LG  HIG IC+P+SK+P+HVL YNT R  KS++FQRLHT+ISKRSG+H+YAGRMGFNHA+   N QQ SFND  PPEPFFLSLIKET WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNHASGRDN-QQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRT
        LIFL EQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSY+LTL+LRRT
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRT

XP_008447932.1 PREDICTED: uncharacterized protein LOC103490269 [Cucumis melo]

1.8e-59

80.5

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVI S LG +HIG IC+P+ K  +HVL YN  R  KS++FQRLHT+ISKRSG H+YAGRMGFNH ASG++ QQ SFND WP EPFFLSLIKET WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        LIFL EQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSY+LTLLLRRTS
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

XP_022928229.1 uncharacterized protein LOC111435124 [Cucurbita moschata]

8.3e-60

73.12

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Query:  TKVTALASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQ
        +K   + ++VY     F+  LL+SCS+MVIASALGANHIG   +P S  PFHV  YNTAR  K+ IFQ L T+IS+R G H+YA RMGFNH ASGRDNQQ
Subjt:  TKVTALASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQ

Query:  LSFNDGWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        L FND  PPEPFFL +IKETVWGLRSL IFLAEQPSQLKYIEWPSFQSTLKTAT ALVLVALLIVALSSVDS LSYILT +LRRTS
Subjt:  LSFNDGWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

XP_038888680.1 uncharacterized protein LOC120078486 [Benincasa hispida]

2.1e-71

91.19

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVIASALGAN IGT+C+P+SK+PFHVLHYNTARF KSTI QRLHT+ISKR+G+HVYAGRMGFNH ASG+DNQQLSFND WPPEPFFLSLIKETVWGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTL LRRTS
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1C8 Uncharacterized protein

2.8e-61

81.01

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNHASGRDN-QQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVI S LG  HIG IC+P+SK+P+HVL YNT R  KS++FQRLHT+ISKRSG+H+YAGRMGFNHA+   N QQ SFND  PPEPFFLSLIKET WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNHASGRDN-QQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRT
        LIFL EQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSY+LTL+LRRT
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRT

A0A1S3BJG9 uncharacterized protein LOC103490269

8.9e-60

80.5

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVI S LG +HIG IC+P+ K  +HVL YN  R  KS++FQRLHT+ISKRSG H+YAGRMGFNH ASG++ QQ SFND WP EPFFLSLIKET WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        LIFL EQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSY+LTLLLRRTS
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

A0A5A7SIK1 Protein translocase complex, SecE/Sec61-gamma subunit

8.9e-60

80.5

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL
        MVI S LG +HIG IC+P+ K  +HVL YN  R  KS++FQRLHT+ISKRSG H+YAGRMGFNH ASG++ QQ SFND WP EPFFLSLIKET WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        LIFL EQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSY+LTLLLRRTS
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

A0A6J1C3M0 uncharacterized protein LOC111008049

4.6e-56

76.73

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Query:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL
        M IASALGANHIG IC P  K P H+LH NT RF KS  FQ+L   IS+RSG H+YAGRM FNH ASGR+N QL+FN+ +PPEPF LSLI+E +WGLRSL
Subjt:  MVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSL

Query:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        LIFL EQPSQLKYIEWPSFQSTLKTATL LVLVALLIVALSSVDSALSYILTL+LRR++
Subjt:  LIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

A0A6J1EK97 uncharacterized protein LOC111435124

4.0e-60

73.12

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Query:  TKVTALASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQ
        +K   + ++VY     F+  LL+SCS+MVIASALGANHIG   +P S  PFHV  YNTAR  K+ IFQ L T+IS+R G H+YA RMGFNH ASGRDNQQ
Subjt:  TKVTALASSVYSS---FDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH-ASGRDNQQ

Query:  LSFNDGWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS
        L FND  PPEPFFL +IKETVWGLRSL IFLAEQPSQLKYIEWPSFQSTLKTAT ALVLVALLIVALSSVDS LSYILT +LRRTS
Subjt:  LSFNDGWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38490.1 unknown protein

1.5e-22

54.7

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Query:  KRSGNHVYAGRMGFNH--ASGRDNQQLSFNDGW-------PPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVAL
        K SG+    GR+   H   SG      S  + W         EP +LSL+++ VW  RSLL F+AEQPSQLKYIEWP+F STLKTATL+L LVA+ IVAL
Subjt:  KRSGNHVYAGRMGFNH--ASGRDNQQLSFNDGW-------PPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVAL

Query:  SSVDSALSYILTLLLRR
        SSVD+AL YIL L+LR+
Subjt:  SSVDSALSYILTLLLRR

Sequences

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CDS sequence

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ATGTTGATTTGTCTTGAGGGCCTTGAAACTTTTGTTTTCAAGCGTGGATTTTACCCAAGAAACCCAACCAAGGTGACTGCGTTAGCTTCGTCAGTGTACTCATCTTTCGA
CGTGGTGTTATTAAGCTCTTGCTCTAAGATGGTGATCGCTTCTGCACTTGGGGCTAATCATATTGGTACGATTTGTGTTCCTCGGTCCAAGGATCCATTCCATGTTCTAC
ATTACAACACAGCAAGATTCTACAAGTCCACAATCTTTCAGAGACTGCACACAAAGATCTCCAAAAGGAGTGGAAATCATGTCTATGCTGGGAGAATGGGTTTTAACCAT
GCATCGGGACGAGATAATCAGCAACTGAGCTTTAATGATGGATGGCCTCCAGAACCTTTCTTCTTGAGTCTAATTAAAGAAACCGTATGGGGATTGAGATCGTTGTTAAT
ATTTCTAGCCGAGCAGCCCAGTCAACTGAAATACATTGAATGGCCTAGCTTCCAAAGCACGCTGAAGACTGCCACATTAGCTCTCGTTCTCGTTGCTCTCTTGATTGTAG
CACTCTCATCGGTGGACTCGGCGCTCAGCTACATTTTGACTTTACTTCTCAGAAGAACCTCATAA

mRNA sequence

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Protein sequence

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MLICLEGLETFVFKRGFYPRNPTKVTALASSVYSSFDVVLLSSCSKMVIASALGANHIGTICVPRSKDPFHVLHYNTARFYKSTIFQRLHTKISKRSGNHVYAGRMGFNH
ASGRDNQQLSFNDGWPPEPFFLSLIKETVWGLRSLLIFLAEQPSQLKYIEWPSFQSTLKTATLALVLVALLIVALSSVDSALSYILTLLLRRTS

Clc02G04350 (gene) of Watermelon (cordophanus) v2 genome