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Clc02G04410 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04410
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontrafficking protein particle complex subunit 2-like protein
Genome locationClcChr02:3808967..3811658
RNA-Seq ExpressionClc02G04410
SyntenyClc02G04410
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily
IPR044760 - Trafficking protein particle complex subunit 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589019.1 Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia]7.3e-7084.02Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

XP_004144858.1 trafficking protein particle complex subunit 2-like protein [Cucumis sativus]3.3e-7084.62Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

XP_022136317.1 trafficking protein particle complex subunit 2-like protein [Momordica charantia]4.7e-6982.25Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

XP_022928280.1 trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]7.3e-7084.02Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

XP_031127945.1 trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]1.2e-6781.55Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA
                               FFRRFHAAYVDAVSNPFHVPGKKITS+TFAESVSTIVKSFG SSA
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA

TrEMBL top hitse value%identityAlignment
A0A0A0K4Q0 Uncharacterized protein1.6e-7084.62Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

A0A1S3BJH9 trafficking protein particle complex subunit 2-like protein1.6e-7084.62Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

A0A6J1C584 trafficking protein particle complex subunit 2-like protein2.3e-6982.25Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSA+
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

A0A6J1ERA2 Trafficking protein particle complex subunit3.5e-7084.02Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

A0A6J1JPT4 Trafficking protein particle complex subunit3.5e-7084.02Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
                               FFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI

SwissProt top hitse value%identityAlignment
A6H7F7 Trafficking protein particle complex subunit 2-like protein1.0e-2640.74Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV
        M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV

Query:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV
                                  FR+ H +Y D + NPF+ PG +I S+ F   V++++
Subjt:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV

B2RYU6 Trafficking protein particle complex subunit 2-like protein2.7e-2740.74Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV
        M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV

Query:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV
                                  FR+ H +Y D + NPF+ PG +I S+ F   V++++
Subjt:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV

Q54CU7 Trafficking protein particle complex subunit 2-like protein1.3e-2941.21Show/hide
Query:  IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRS
        IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ 
Subjt:  IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRS

Query:  VSTICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKS
                                  FF+R    +++  SNPF+ P  K+ SK F + V+ +V S
Subjt:  VSTICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKS

Q5M8X5 Trafficking protein particle complex subunit 2-like protein1.6e-2741.36Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV
        M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV

Query:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV
                                  FR+ H +Y D + NPF+ PG  I S+ F  +V++++
Subjt:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV

Q9JME7 Trafficking protein particle complex subunit 2-like protein3.6e-2740.74Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV
        M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++RS+
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRSV

Query:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV
                                  FR+ H +Y D + NPF+ PG +I S+ F   V++++
Subjt:  STICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIV

Arabidopsis top hitse value%identityAlignment
AT2G20930.1 SNARE-like superfamily protein2.2e-6473.49Show/hide
Query:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST
        MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLGLLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVRS   
Subjt:  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVST

Query:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFS
                               FFR+FHAAYVDAVSNPFHVPGKKITS+TFA++VS IV S+G +
Subjt:  ICGFSIFYSIIVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTGTACACTGTTCGCT
GGATGTCGTCGATGAGCGGGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGACCGAAAATTACAAAGTGTATGGCTATT
TGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTGTGAGTACCATTTGTGGGTTTTCAATTTTCTACAGCATT
ATAGTTCTTTCATTTTCACATGTGAACTATCACTGTAAATTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAGAAAAT
TACATCCAAGACATTTGCAGAAAGTGTGAGCACCATTGTCAAGTCCTTTGGCTTCAGTTCAGCTATTTGA
mRNA sequenceShow/hide mRNA sequence
AAGAGTTACCATTAGTTTTTTCTTCACCCAATTTAGAAGATCCAACCTTCTTCGTGGTATCGCGACCGAAAAATTCGCATTGCCCGAGTTTTTTTTTCGCAATCCAGCAA
AATAATTCCGGCCAGCCATCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAA
GCTCCACCACATTGTACACTGTTCGCTGGATGTCGTCGATGAGCGGGTGAACAATCCGAGAAAATCTGGACCAACCCTGAACGAAACATTTCTGGGTCTTCTTTATCCGA
CCGAAAATTACAAAGTGTATGGCTATTTGACTAACACCAAAGTGAAGTTTATTATGGTGACAACAGATCTAGATGTCAGAGATGCCGATGTGAGAAGTGTGAGTACCATT
TGTGGGTTTTCAATTTTCTACAGCATTATAGTTCTTTCATTTTCACATGTGAACTATCACTGTAAATTTTTCAGGAGATTTCATGCTGCATATGTGGATGCAGTTTCAAA
CCCATTTCATGTGCCAGGTAAGAAAATTACATCCAAGACATTTGCAGAAAGTGTGAGCACCATTGTCAAGTCCTTTGGCTTCAGTTCAGCTATTTGAGTGACAAACCAGG
CAACCATTGACGTGTAGAACTGAAACTTCAATACCGAGTCTGAAGCCATTGACAGCCGTAGTTTACCTTACTGCTGTTGTCTACTGCCATTTTTCTTGTATTCTTGATAG
TATTTGAAATTTCTTTTTCTCCAGTGTAGTAAGAAAGGTGAAACAATTCAACTTTCTTTTTTCATTGGCATTTACTGTTTCTATTTTATGCTCGTCTCACATGACAGACT
GGTTTCTGTTTCAAGGTGAAAATTTATCCGTATGAAATGCAAGATTGAAGGGTTTATTATTATTGTTTTTTAAAGA
Protein sequenceShow/hide protein sequence
MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSVSTICGFSIFYSI
IVLSFSHVNYHCKFFRRFHAAYVDAVSNPFHVPGKKITSKTFAESVSTIVKSFGFSSAI