; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G04700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein
Genome locationClcChr02:4090776..4091494
RNA-Seq ExpressionClc02G04700
SyntenyClc02G04700
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049726.1 hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa]4.4e-5991.47Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        M+ YR RTT DSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLI+LVR LSS+DPSFFSSSPWDRRRRTHH+PAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        +SPWGVAA IVLLLVL+QFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

KAG6588994.1 hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sororia]2.4e-5791.47Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        MS+YR RTT DSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWILFATPVLLI+L R+LSSVDPS+FSSSPWDRRRRTH LPAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        SSPWGVAALIVLLLVLVQFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

KGN43227.1 hypothetical protein Csa_020160 [Cucumis sativus]2.2e-5889.92Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        M+ YR RTT DSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLI+LVR LSS+DP+FFSSSPWDRRRRTHH+PAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        +SPWGVAA I+LLLVL+QFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

XP_022989070.1 uncharacterized protein LOC111486253 [Cucurbita maxima]2.2e-5893.02Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        MS+YR RTT DSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWILFATPVLLI+L R LSSVDPSFFSSSPWDRRRRTHHLPAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        SSPWGVAALIVLLLVLVQFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

XP_038888316.1 uncharacterized protein LOC120078163 [Benincasa hispida]3.0e-6095.35Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        M+ YR RTT DSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAED INWILFATPVLLIVLVR+LSSVDPSFFSSSPWDRRRRTHHLPAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        SSPWGVAALIVLLLVLVQFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

TrEMBL top hitse value%identityAlignment
A0A0A0K4L6 Uncharacterized protein1.1e-5889.92Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        M+ YR RTT DSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLI+LVR LSS+DP+FFSSSPWDRRRRTHH+PAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        +SPWGVAA I+LLLVL+QFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

A0A5A7U6E4 Uncharacterized protein2.1e-5991.47Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        M+ YR RTT DSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLI+LVR LSS+DPSFFSSSPWDRRRRTHH+PAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        +SPWGVAA IVLLLVL+QFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

A0A5N5I8U5 Uncharacterized protein2.8e-4367.44Show/hide
Query:  MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSF-FSSSPWDRRRRTHHLPAEG
        M++YRR+ T S L+  SL+P PYPVLL+LAV+SIFLG SW+ SYESAVE AE   NW+L  TP+ LI++V+ LSS+DP + FS SPWDRRRRTHH+P+EG
Subjt:  MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSF-FSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        SSPWGVAA I+LLLVL+Q+QSSFR+SW I
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

A0A6J1C2N0 uncharacterized protein LOC1110078957.1e-5585.94Show/hide
Query:  MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGS
        MS YRR+T DSILDSLSLNP PYPVLLLL VV +FLGASWW SYESAVEAAE+ INW+LFATPVLLIVLVR LSSVDPSFF+SSPW+RRR TH LP EGS
Subjt:  MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGS

Query:  SPWGVAALIVLLLVLVQFQSSFRESWSI
        SPWGVAALIVLLLVLVQFQS+FRESWSI
Subjt:  SPWGVAALIVLLLVLVQFQSSFRESWSI

A0A6J1JLC4 uncharacterized protein LOC1114862531.1e-5893.02Show/hide
Query:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG
        MS+YR RTT DSILDSLSLNP PYPVLLLLAVV IFLGASWWLSYESAVEAAED INWILFATPVLLI+L R LSSVDPSFFSSSPWDRRRRTHHLPAEG
Subjt:  MSHYR-RTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEG

Query:  SSPWGVAALIVLLLVLVQFQSSFRESWSI
        SSPWGVAALIVLLLVLVQFQSSFRESWSI
Subjt:  SSPWGVAALIVLLLVLVQFQSSFRESWSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21180.1 unknown protein5.0e-2958.73Show/hide
Query:  SILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDP-----SFFSSSPWDRRRRTHHLPAE----GSS
        SILDS SL+P PYPVLL+LAV S+FL +SW+ S E A E+AE+ IN+ L   P+ LIVLVR LSS++        FSSS    RR T+  P      GSS
Subjt:  SILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDP-----SFFSSSPWDRRRRTHHLPAE----GSS

Query:  PWGVAALIVLLLVLVQFQSSFRESWS
        PWGVAALIVLLLVL+Q+QSSF E WS
Subjt:  PWGVAALIVLLLVLVQFQSSFRESWS

AT2G31940.1 unknown protein5.2e-1029.91Show/hide
Query:  PPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ
        P P  + + + ++ +F+  SW+ SYE  +E         L A+P+LL++ V  LS         +          L   G +PWGVA ++V L  +V +Q
Subjt:  PPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ

Query:  SSFRESW
        S F+E W
Subjt:  SSFRESW

AT5G19875.1 unknown protein1.1e-1541.88Show/hide
Query:  SILDSLSLNPPPYPVLLLLAVVSIF-LGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALI
        S LD LSL   P P L  L +V  F L  +W+L++ES +E   DH+  +   TP+ L++LV   S    SF+   PW  +   H     GSSPWGVAA++
Subjt:  SILDSLSLNPPPYPVLLLLAVVSIF-LGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALI

Query:  VLLLVLVQFQSSFRESW
        VL+L +V +QS F+E W
Subjt:  VLLLVLVQFQSSFRESW

AT5G42146.1 unknown protein2.8e-1134.23Show/hide
Query:  LSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVL
        L+ + PP  +L LLA++S+ L  S +  Y+  VE    ++   +   P+L + ++  LS V    F SS   R  +   L  EG+ PWGV  +++LLL+L
Subjt:  LSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVL

Query:  VQFQSSFRESW
        V  QS F   W
Subjt:  VQFQSSFRESW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCATTACAGAAGAACCACCACAGATTCAATTCTCGATTCTCTTTCCCTCAATCCTCCGCCGTATCCCGTCCTCCTCCTCCTCGCCGTCGTCTCCATCTTCCTCGG
CGCTTCCTGGTGGCTCTCCTACGAGTCCGCCGTTGAGGCTGCCGAGGATCACATCAACTGGATTCTCTTCGCCACACCGGTTCTCCTCATCGTTCTCGTCCGACTCCTCT
CCTCTGTCGATCCGAGCTTCTTTTCTTCCTCGCCTTGGGACCGTCGCCGCCGCACGCATCATCTCCCGGCCGAAGGAAGCTCGCCGTGGGGCGTGGCTGCGTTGATCGTG
CTCTTGCTCGTTCTTGTGCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATTTGA
mRNA sequenceShow/hide mRNA sequence
AATGCATTGAACTGAACTTCCCATTTCTCTTCATCTTCTCAATTTGAAAAAAGAAAAATCCCCAAAAATCAAAATCAATGAGCCATTACAGAAGAACCACCACAGATTCA
ATTCTCGATTCTCTTTCCCTCAATCCTCCGCCGTATCCCGTCCTCCTCCTCCTCGCCGTCGTCTCCATCTTCCTCGGCGCTTCCTGGTGGCTCTCCTACGAGTCCGCCGT
TGAGGCTGCCGAGGATCACATCAACTGGATTCTCTTCGCCACACCGGTTCTCCTCATCGTTCTCGTCCGACTCCTCTCCTCTGTCGATCCGAGCTTCTTTTCTTCCTCGC
CTTGGGACCGTCGCCGCCGCACGCATCATCTCCCGGCCGAAGGAAGCTCGCCGTGGGGCGTGGCTGCGTTGATCGTGCTCTTGCTCGTTCTTGTGCAGTTCCAGTCCTCG
TTCCGTGAGAGCTGGTCCATTTGATGAAGGTTTCGAAGGTGTATAGATTTGACGAACGCGATCGCTTCTCTGTAGTTGGAGAGCGATAGAGGTATAATAATTTCTGTTGA
TTTTTTGTTTTTGGAAAGGAAATTAGTGTTGTTTGTATATAGTGAATGTCTCTCTGATGTATCATTTGAAGCAAATCTTATTAGTTTGTTTTGTTTCTAGGGCTTCAATC
ATGAACAATGAAGATGAACTCGTTTTTGTTTATCAAATAAATATAAATACTCTGTCTAA
Protein sequenceShow/hide protein sequence
MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIV
LLLVLVQFQSSFRESWSI