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Clc02G04800 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04800
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionauxin-responsive protein SAUR24-like
Genome locationClcChr02:4158494..4159143
RNA-Seq ExpressionClc02G04800
SyntenyClc02G04800
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645661.1 hypothetical protein Csa_020412 [Cucumis sativus]3.6e-3185.33Show/hide
Query:  QRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQL
        +R S+V KGYCAVYVGENQKKRFVIP+TYLNQPCFQDL +Q TEEFEYYHPMGGLTFHC DDIFA++ISHLNEQL
Subjt:  QRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQL

KAG6572089.1 Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2570.11Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        M L +LL   S +  +  +VV KGYCAVYVGE QKKRFVIPVTYLNQPCFQDL SQA +EF YYHPMGGLT  CR+DIF N+IS LN
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

KGN43209.1 hypothetical protein Csa_020258 [Cucumis sativus]8.5e-2567.82Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        M + +LL  +S +  +  +VV KGYCAVYVGE QKKRFVIP+TYLNQPCFQ L SQA EEF YYHPMGGLT  CR+DIF N+IS LN
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

XP_016900447.1 PREDICTED: auxin-induced protein 15A-like [Cucumis melo]5.0e-2571.08Show/hide
Query:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        R+L L      +  +VV KGYCAVYVGE QKKRFVIPVTYLNQPCFQ L SQA EEF YYHPMGGLT  CR+DIF N+IS LN
Subjt:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]9.1e-2770.45Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE
        MGLR+LL       NQ  S V KGYCAVYVGE+QKKRFVIP++YLNQPCFQ+L  QA EEF YYHPMGGLT HCRDDIF ++IS LN+
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE

TrEMBL top hitse value%identityAlignment
A0A0A0K4K1 Uncharacterized protein2.4e-2572.97Show/hide
Query:  NQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE
        NQ  S V KGYCAVYVGE+QKKRFVIP+TYLN+PCFQ L  Q  EEF YYHPMGGLT HCRDDIF ++IS++N+
Subjt:  NQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE

A0A0A0K5V1 Uncharacterized protein5.5e-3885.56Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQL
        MGLRRLL  SSM GNQR S+V KGYCAVYVGENQKKRFVIP+TYLNQPCFQDL +Q TEEFEYYHPMGGLTFHC DDIFA++ISHLNEQL
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQL

A0A1S4DWU0 auxin-induced protein 15A-like2.4e-2571.08Show/hide
Query:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        R+L L      +  +VV KGYCAVYVGE QKKRFVIPVTYLNQPCFQ L SQA EEF YYHPMGGLT  CR+DIF N+IS LN
Subjt:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

A0A5D3CL76 Auxin-induced protein 15A-like2.4e-2571.08Show/hide
Query:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        R+L L      +  +VV KGYCAVYVGE QKKRFVIPVTYLNQPCFQ L SQA EEF YYHPMGGLT  CR+DIF N+IS LN
Subjt:  RLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

A0A6J1C4W2 auxin-responsive protein SAUR24-like4.4e-2770.45Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE
        MGLR+LL       NQ  S V KGYCAVYVGE+QKKRFVIP++YLNQPCFQ+L  QA EEF YYHPMGGLT HCRDDIF ++IS LN+
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG72.1e-1867.16Show/hide
Query:  KGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQ
        KGY AVYVGEN  KRFVIPV++LNQP FQDL SQA EEF Y HPMGGLT  C +D+F ++ S L+ Q
Subjt:  KGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQ

P33079 Auxin-induced protein 10A54.7e-1852.33Show/hide
Query:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE
        +RR    ++   ++R   V KGY AVYVG+ + +RF IPV+YLN+P FQ+L SQA EEF Y HPMGGLT  C+++ F N+ +HLNE
Subjt:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE

P33080 Auxin-induced protein X10A2.1e-1856.1Show/hide
Query:  SSMTGNQRGS---VVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE
        +S+  NQ  S    V KGY  VYVG+ + +RF+IPV+YLNQP FQDL +QA EEF Y HPMGGLT  C++D F  + SHLN+
Subjt:  SSMTGNQRGS---VVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNE

P33083 Auxin-induced protein 6B2.1e-1858.02Show/hide
Query:  SSMTGNQRGSV---VSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        +S + NQ  S    V KGY AVYVGE + +RFVIPV+YLN+P FQDL SQA EEF Y+HP GGLT  C +D+F ++ S LN
Subjt:  SSMTGNQRGSV---VSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

Q9FK62 Auxin-responsive protein SAUR241.2e-1856.96Show/hide
Query:  MLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL
        +LS  TG   GS   KG+ AVYVGE+QKKR+++PV+YLNQP FQ L S++ EEF + HPMGGLT  C +D F N+ S L
Subjt:  MLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL

Arabidopsis top hitse value%identityAlignment
AT4G38840.1 SAUR-like auxin-responsive protein family7.4e-1952.94Show/hide
Query:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        LR+  +LSS + +     V KGY AVYVGE   KRFV+PV+YL+QP FQDL  +A EEF + HPMGGLT  C ++IF ++ S  N
Subjt:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

AT5G18010.1 SAUR-like auxin-responsive protein family1.3e-1848.84Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL
        +G +++L  S+      GS   KG+ AVYVGE+QKKR+++P++YL+QP FQ L S++ EEF + HPMGGLT  C +D F N+ S L
Subjt:  MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL

AT5G18030.1 SAUR-like auxin-responsive protein family2.2e-1848.81Show/hide
Query:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL
        +R LL    +      S   KG+ AVYVGE+QKKR+++P++YL+QP FQ L S++ EEF + HPMGGLT  C +D F N+ S L
Subjt:  LRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL

AT5G18060.1 SAUR-like auxin-responsive protein family1.6e-1848.89Show/hide
Query:  MGLRRLLMLSSMTGNQRGSVVS---KGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN
        M L R L+++    ++  + VS   KG+ AVYVGE+QKKR+++P++YLNQP FQ L S++ EEF + HPMGGLT  C +D F N+ S L+
Subjt:  MGLRRLLMLSSMTGNQRGSVVS---KGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLN

AT5G18080.1 SAUR-like auxin-responsive protein family8.7e-2056.96Show/hide
Query:  MLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL
        +LS  TG   GS   KG+ AVYVGE+QKKR+++PV+YLNQP FQ L S++ EEF + HPMGGLT  C +D F N+ S L
Subjt:  MLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCGTCGTCTTCTAATGCTGTCTTCAATGACAGGAAACCAGAGAGGTTCCGTGGTTTCTAAGGGTTATTGTGCAGTCTATGTTGGAGAGAACCAAAAGAAACG
GTTCGTGATTCCGGTTACTTACTTGAATCAACCATGTTTTCAAGACTTGTTTAGTCAAGCTACTGAAGAATTTGAATATTATCATCCAATGGGTGGTCTAACATTTCACT
GCAGAGATGATATCTTTGCTAATATGATCTCTCACTTGAATGAACAACTATGA
mRNA sequenceShow/hide mRNA sequence
TCTCATTCCCTTCTCTTTCTTCTCAAGGAACATTGAAACATTCTTTCATCAATGGGACTTCGTCGTCTTCTAATGCTGTCTTCAATGACAGGAAACCAGAGAGGTTCCGT
GGTTTCTAAGGGTTATTGTGCAGTCTATGTTGGAGAGAACCAAAAGAAACGGTTCGTGATTCCGGTTACTTACTTGAATCAACCATGTTTTCAAGACTTGTTTAGTCAAG
CTACTGAAGAATTTGAATATTATCATCCAATGGGTGGTCTAACATTTCACTGCAGAGATGATATCTTTGCTAATATGATCTCTCACTTGAATGAACAACTATGAGAGATA
GTACCAAAAGTATATATGGGGGTACAATTTTGATCTTGGAATATAGGCATGAGAGACTTCATTGTAAATTCTATTAATCTTTCTTTTTCTTTTTTTTGTTTTCCTTCATG
GGAGTGAAAAAAACATGATCTCCTTGCATTAGGACATTGCTAATGGATATAACTTTATGGAAAAGGTAGAGCATCTTTCTCCAAAAGTTTTTTGGTTCTTTGTAATCTAG
CAATAGTTCAGTTACTAAAATCTTGGTTACTTAGTTGATTCAATCGATGGTCGTAATTTTAATGGGAAAACTCAGAGTATGTTTAGAATGACATTCTAAG
Protein sequenceShow/hide protein sequence
MGLRRLLMLSSMTGNQRGSVVSKGYCAVYVGENQKKRFVIPVTYLNQPCFQDLFSQATEEFEYYHPMGGLTFHCRDDIFANMISHLNEQL