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Clc02G04810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionauxin-responsive protein SAUR24-like
Genome locationClcChr02:4161605..4162204
RNA-Seq ExpressionClc02G04810
SyntenyClc02G04810
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645660.1 hypothetical protein Csa_020551 [Cucumis sativus]5.3e-2671.25Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQ
        MG+R LL+R    S++PKGYCAVYVGENQKKRFVIP+T+LNQ C Q+LL Q  E+F Y HPMGGLT HC+DDIFTDLIS+
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQ

KAE8645661.1 hypothetical protein Csa_020412 [Cucumis sativus]6.0e-3080.77Show/hide
Query:  HLLRR-SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQL
        H ++R S VPKGYCAVYVGENQKKRFVIP+TYLNQPC QDLL Q TEEF+Y HPMGGLTFHC DDIF DLIS LN+QL
Subjt:  HLLRR-SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQL

KAG6572089.1 Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]9.0e-2670.45Show/hide
Query:  MGLRHLLRRSS---------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ
        M L  LLRR S         VPKGYCAVYVGE QKKRFVIPVTYLNQPC QDLL QA +EF Y HPMGGLT  C++DIFT+LISQLN+
Subjt:  MGLRHLLRRSS---------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ

XP_011658582.1 auxin-responsive protein SAUR24 [Cucumis sativus]1.8e-2671.95Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        M L HLL+R    SS+PKGYCAVYVGE+QKKRF+IP++YLNQPC Q+LL Q  EEF Y HPMGGLT HCKD IFT+LIS+LN
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]1.1e-2876.83Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        MGLR LL+R    S+VPKGYCAVYVGE+QKKRFVIP++YLNQPC Q+LL QA EEF Y HPMGGLT HC+DDIFTDLIS+LN
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

TrEMBL top hitse value%identityAlignment
A0A0A0K4K1 Uncharacterized protein1.8e-2773.17Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        M L+HLL+R    S+VPKGYCAVYVGE+QKKRFVIP+TYLN+PC Q LL Q  EEF Y HPMGGLT HC+DDIFTDLIS +N
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

A0A0A0K5U4 Uncharacterized protein8.8e-2771.95Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        M L HLL+R    SS+PKGYCAVYVGE+QKKRF+IP++YLNQPC Q+LL Q  EEF Y HPMGGLT HCKD IFT+LIS+LN
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

A0A0A0K5V1 Uncharacterized protein1.4e-3277.78Show/hide
Query:  MGLRHLLRRSS---------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQL
        MGLR LLRRSS         VPKGYCAVYVGENQKKRFVIP+TYLNQPC QDLL Q TEEF+Y HPMGGLTFHC DDIF DLIS LN+QL
Subjt:  MGLRHLLRRSS---------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQL

A0A5D3CL76 Auxin-induced protein 15A-like9.7e-2671.76Show/hide
Query:  MGLRHLLRRSS------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ
        M +  LLRR+S      VPKGYCAVYVGE QKKRFVIPVTYLNQPC Q LL QA EEF Y HPMGGLT  C++DIFT+LISQLN+
Subjt:  MGLRHLLRRSS------VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ

A0A6J1C4W2 auxin-responsive protein SAUR24-like5.5e-2976.83Show/hide
Query:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        MGLR LL+R    S+VPKGYCAVYVGE+QKKRFVIP++YLNQPC Q+LL QA EEF Y HPMGGLT HC+DDIFTDLIS+LN
Subjt:  MGLRHLLRR----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG73.8e-1966.18Show/hide
Query:  PKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQ
        PKGY AVYVGEN  KRFVIPV++LNQP  QDLL QA EEF Y HPMGGLT  C +D+F  + S L+ Q
Subjt:  PKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQ

P33080 Auxin-induced protein X10A2.5e-1864.18Show/hide
Query:  VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        VPKGY  VYVG+ + +RF+IPV+YLNQP  QDLL QA EEF Y HPMGGLT  CK+D F  + S LN
Subjt:  VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

P33081 Auxin-induced protein 15A3.4e-2061.04Show/hide
Query:  GLRHLLRRSSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        G+R   + +  PKGY AVYVGE + KRFVIPV+YLNQP  QDLL QA EEF Y HPMGGLT  C +D+F  + S LN
Subjt:  GLRHLLRRSSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

Q41220 Auxin-responsive protein SAUR151.1e-1853.09Show/hide
Query:  MGLRHLLRR--SSVPKGYCAVYVGEN--QKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL
        +G + ++RR  SS P+G+ AVYVGEN  +KKR+V+PV+YLNQP  Q LL ++ EEF Y HPMGGLT  C + +F  + SQ+
Subjt:  MGLRHLLRR--SSVPKGYCAVYVGEN--QKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL

Q9FK62 Auxin-responsive protein SAUR241.4e-1851.22Show/hide
Query:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL
        +G + +L R     S+ PKG+ AVYVGE+QKKR+++PV+YLNQP  Q LL ++ EEF + HPMGGLT  C +D F ++ S+L
Subjt:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family4.6e-2057.14Show/hide
Query:  LRHLLRRSSVPKGYCAVYVGE-NQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        L H     ++PKG+ AVYVGE  QK+RFV+PVTYL+ PC Q LL +A EEF + HPMGGLT  C + IF DL S+L+
Subjt:  LRHLLRRSSVPKGYCAVYVGE-NQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

AT4G38840.1 SAUR-like auxin-responsive protein family5.5e-2164.18Show/hide
Query:  VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN
        VPKGY AVYVGE   KRFV+PV+YL+QP  QDLL +A EEF + HPMGGLT  C ++IF DL S+ N
Subjt:  VPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLN

AT4G38850.1 SAUR-like auxin-responsive protein family7.9e-2053.09Show/hide
Query:  MGLRHLLRR--SSVPKGYCAVYVGEN--QKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL
        +G + ++RR  SS P+G+ AVYVGEN  +KKR+V+PV+YLNQP  Q LL ++ EEF Y HPMGGLT  C + +F  + SQ+
Subjt:  MGLRHLLRR--SSVPKGYCAVYVGEN--QKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL

AT5G18020.1 SAUR-like auxin-responsive protein family2.3e-1947.62Show/hide
Query:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ
        +G + +L R     S+ PKG+ AVYVGE+QKKR+++P++YLNQP  Q LL ++ EEF + HPMGGLT  C +D F ++ S+  +
Subjt:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQ

AT5G18080.1 SAUR-like auxin-responsive protein family1.0e-1951.22Show/hide
Query:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL
        +G + +L R     S+ PKG+ AVYVGE+QKKR+++PV+YLNQP  Q LL ++ EEF + HPMGGLT  C +D F ++ S+L
Subjt:  MGLRHLLRR-----SSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTTCGCCATCTTCTCCGGCGGTCTTCGGTTCCGAAGGGCTATTGTGCAGTCTATGTTGGAGAGAATCAAAAGAAGCGGTTCGTGATTCCAGTAACTTACTTGAA
TCAACCATGTCTACAAGATTTGCTTGGTCAAGCTACAGAAGAATTTGATTACTGTCATCCAATGGGTGGTCTCACATTTCACTGCAAAGATGATATCTTCACTGATCTGA
TCTCTCAGTTAAATCAACAACTATGA
mRNA sequenceShow/hide mRNA sequence
TCTCATTCCCTTTCATTTCTCAAGAAGCATTGAAATATTCTTCTATCTTCTAGGATTTCCTTCATCAATTGAACTCAAAAAGACATGGGACTTCGCCATCTTCTCCGGCG
GTCTTCGGTTCCGAAGGGCTATTGTGCAGTCTATGTTGGAGAGAATCAAAAGAAGCGGTTCGTGATTCCAGTAACTTACTTGAATCAACCATGTCTACAAGATTTGCTTG
GTCAAGCTACAGAAGAATTTGATTACTGTCATCCAATGGGTGGTCTCACATTTCACTGCAAAGATGATATCTTCACTGATCTGATCTCTCAGTTAAATCAACAACTATGA
GAGGGAACAACAAACTTGTTAAGAACAATTTTGATCAAGAACAATAGGCATAGAAAGTTTCATGTAAATTCTTTTTTTGTTTCCTTCCATGGGAGTAAAAGAATGTGATC
TCCCAGCATGAGGAAATTACTATATGGAAAATGAAGAGCTTCTTTCTCCAAAAAGAATTATTTTGTCATTTGCAATCTAGTAATAGTTCATTAACCAATGCATTTCAGTC
AATAAATTCGTGCAATGTACAGCTAAAATCGCTTCCAAACATGGCCCCAG
Protein sequenceShow/hide protein sequence
MGLRHLLRRSSVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLGQATEEFDYCHPMGGLTFHCKDDIFTDLISQLNQQL