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Clc02G04830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionauxin-responsive protein SAUR24-like
Genome locationClcChr02:4167981..4168567
RNA-Seq ExpressionClc02G04830
SyntenyClc02G04830
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049710.1 auxin-induced protein 15A-like [Cucumis melo var. makuwa]4.8e-3076.19Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        M L HLLKR++GVSA+PKGY AVYVG+SQKKRF+IPI YLN+P FQELL QTEEEFGY+HP+GGLTIHC DDIF + IS +NDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

KAE8645660.1 hypothetical protein Csa_020551 [Cucumis sativus]4.8e-3082.5Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR
        MG+  LLKR+QGVS IPKGY AVYVGE+QKKRFVIPIT+LNQ  FQELLSQTEE+FGYHHP+GGLTIHC DDIF DLISR
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR

XP_011658582.1 auxin-responsive protein SAUR24 [Cucumis sativus]9.3e-3485.71Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        M L+HLLKRSQGVS+IPKGY AVYVGESQKKRF+IPI+YLNQP FQELLSQTEEEFGYHHP+GGLTIHC+D IF +LISRLNDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

XP_016900447.1 PREDICTED: auxin-induced protein 15A-like [Cucumis melo]2.7e-2570.24Show/hide
Query:  MGLLHLLKRS--QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN
        M +L LL+R+  +GV+ +PKGY AVYVGE QKKRFVIP+TYLNQP FQ LLSQ EEEFGY+HP+GGLTI C +DIF +LIS+LN
Subjt:  MGLLHLLKRS--QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]7.9e-3384.52Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        MGL  LLKR+QGVSA+PKGY AVYVGESQKKRFVIPI+YLNQP FQELL Q EEEFGY+HP+GGLTIHC DDIF DLISRLNDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

TrEMBL top hitse value%identityAlignment
A0A0A0K4K1 Uncharacterized protein1.5e-3282.14Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        M L HLLKR+QGVSA+PKGY AVYVGESQKKRFVIPITYLN+P FQ+LL QTEEEFGY+HP+GGLTIHC DDIF DLIS +NDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

A0A0A0K5U4 Uncharacterized protein4.5e-3485.71Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        M L+HLLKRSQGVS+IPKGY AVYVGESQKKRF+IPI+YLNQP FQELLSQTEEEFGYHHP+GGLTIHC+D IF +LISRLNDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

A0A0A0K5V1 Uncharacterized protein7.0e-2771.59Show/hide
Query:  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLND
        MGL  LL+RS     Q VS +PKGY AVYVGE+QKKRFVIPITYLNQP FQ+LL+QT EEF Y+HP+GGLT HC DDIF DLIS LN+
Subjt:  MGLLHLLKRS-----QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLND

A0A5A7U363 Auxin-induced protein 15A-like2.3e-3076.19Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        M L HLLKR++GVSA+PKGY AVYVG+SQKKRF+IPI YLN+P FQELL QTEEEFGY+HP+GGLTIHC DDIF + IS +NDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

A0A6J1C4W2 auxin-responsive protein SAUR24-like3.8e-3384.52Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL
        MGL  LLKR+QGVSA+PKGY AVYVGESQKKRFVIPI+YLNQP FQELL Q EEEFGY+HP+GGLTIHC DDIF DLISRLNDL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR235.9e-2362.34Show/hide
Query:  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN
        L + +  VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL+
Subjt:  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN

Q9FJF7 Auxin-responsive protein SAUR224.5e-2360.98Show/hide
Query:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS   VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++E+EFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL

Q9FJF9 Auxin-responsive protein SAUR212.9e-2260.49Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS   SA PKG+ AVYVGESQKKR+++P++YL+QP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL

Q9FJG0 Auxin-responsive protein SAUR201.3e-2261.73Show/hide
Query:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR
        +G   +L RS    SA PKG+ AVYVGESQKKR+++PI+YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SR
Subjt:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR

Q9FK62 Auxin-responsive protein SAUR241.2e-2362.2Show/hide
Query:  MGLLHLLKRSQGV-SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS G  SA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRSQGV-SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL

Arabidopsis top hitse value%identityAlignment
AT5G18020.1 SAUR-like auxin-responsive protein family9.3e-2461.73Show/hide
Query:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR
        +G   +L RS    SA PKG+ AVYVGESQKKR+++PI+YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SR
Subjt:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISR

AT5G18030.1 SAUR-like auxin-responsive protein family2.1e-2360.49Show/hide
Query:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS   SA PKG+ AVYVGESQKKR+++P++YL+QP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL

AT5G18050.1 SAUR-like auxin-responsive protein family3.2e-2460.98Show/hide
Query:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS   VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++E+EFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRS-QGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL

AT5G18060.1 SAUR-like auxin-responsive protein family4.2e-2462.34Show/hide
Query:  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN
        L + +  VSA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL+
Subjt:  LLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLN

AT5G18080.1 SAUR-like auxin-responsive protein family8.4e-2562.2Show/hide
Query:  MGLLHLLKRSQGV-SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL
        +G   +L RS G  SA PKG+ AVYVGESQKKR+++P++YLNQP FQ LLS++EEEFG+ HP+GGLTI C +D FI++ SRL
Subjt:  MGLLHLLKRSQGV-SAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTTCTCCATCTTCTTAAAAGAAGCCAAGGCGTTTCAGCAATTCCCAAGGGCTATTTTGCGGTATACGTCGGAGAGAGCCAAAAGAAGCGGTTTGTGATTCCGAT
TACTTACTTGAATCAACCATGGTTTCAAGAGTTGCTTAGTCAGACTGAAGAAGAATTCGGTTACCATCATCCAATAGGAGGTCTTACTATTCATTGCGAAGATGATATCT
TCATTGACCTCATCTCTCGTTTGAATGATCTATGA
mRNA sequenceShow/hide mRNA sequence
CAAGTTTTCACATTCTAATTCAAAAGAAACTTTCTTCTCTCGAACTGAGAAGTGTTCTACAATACCATACAACATGGGGCTTCTCCATCTTCTTAAAAGAAGCCAAGGCG
TTTCAGCAATTCCCAAGGGCTATTTTGCGGTATACGTCGGAGAGAGCCAAAAGAAGCGGTTTGTGATTCCGATTACTTACTTGAATCAACCATGGTTTCAAGAGTTGCTT
AGTCAGACTGAAGAAGAATTCGGTTACCATCATCCAATAGGAGGTCTTACTATTCATTGCGAAGATGATATCTTCATTGACCTCATCTCTCGTTTGAATGATCTATGAGA
GACATTCTAATACAGTAGATCAGACACTAGAAATAACCAACACCCATGTACATTTTTTTTCATTTTCGTCATTCTTTTTTTGTTTTCCTTTAAGTGGGGAGTAAAATAAT
GTTTCCCTGCTCAAGGAAATTACCCAAGGATGAAAATGAAATGGTCTCAGTTCTAAAGGAAATTTGAGAGGTTCATTCCTTAAAAAAGTACTCTTTATTTTATGGTTATG
CTTCTAATTTTATTTATGCAATCATATGAATCTCAAC
Protein sequenceShow/hide protein sequence
MGLLHLLKRSQGVSAIPKGYFAVYVGESQKKRFVIPITYLNQPWFQELLSQTEEEFGYHHPIGGLTIHCEDDIFIDLISRLNDL