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Clc02G04850 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G04850
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAuxin-responsive protein
Genome locationClcChr02:4180955..4182747
RNA-Seq ExpressionClc02G04850
SyntenyClc02G04850
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572089.1 Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3991.86Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MR+LQLLRRPSTSTKEGV VVPKGYCAVYVGEIQKKRF+IPVTYLNQPCFQDLLSQ+E+EFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

KGN43209.1 hypothetical protein Csa_020258 [Cucumis sativus]2.0e-3891.86Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MRILQLLRR STSTKEGVAVVPKGYCAVYVGEIQKKRF+IP+TYLNQPCFQ LLSQ+EEEFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

XP_011658582.1 auxin-responsive protein SAUR24 [Cucumis sativus]9.1e-2869.77Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MR++ LL+R      +GV+ +PKGYCAVYVGE QKKRFIIP++YLNQPCFQ+LLSQ+EEEFGY+HPMGGLTI C++ IFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

XP_016900447.1 PREDICTED: auxin-induced protein 15A-like [Cucumis melo]3.5e-3589.53Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MRILQLLRR S   KEGVAVVPKGYCAVYVGEIQKKRF+IPVTYLNQPCFQ LLSQ+EEEFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]5.3e-2870.93Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        M + QLL+R      +GV+ VPKGYCAVYVGE QKKRF+IP++YLNQPCFQ+LL Q+EEEFGYYHPMGGLTI CR+DIFT+LIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

TrEMBL top hitse value%identityAlignment
A0A0A0K2F9 Uncharacterized protein9.5e-3991.86Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MRILQLLRR STSTKEGVAVVPKGYCAVYVGEIQKKRF+IP+TYLNQPCFQ LLSQ+EEEFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

A0A0A0K4K1 Uncharacterized protein2.6e-2870.93Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MR+  LL+R      +GV+ VPKGYCAVYVGE QKKRF+IP+TYLN+PCFQ LL Q+EEEFGYYHPMGGLTI CR+DIFT+LIS++
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

A0A1S4DWU0 auxin-induced protein 15A-like1.7e-3589.53Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MRILQLLRR S   KEGVAVVPKGYCAVYVGEIQKKRF+IPVTYLNQPCFQ LLSQ+EEEFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

A0A5D3CL76 Auxin-induced protein 15A-like1.7e-3589.53Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        MRILQLLRR S   KEGVAVVPKGYCAVYVGEIQKKRF+IPVTYLNQPCFQ LLSQ+EEEFGYYHPMGGLTIQCREDIFTNLIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

A0A6J1C4W2 auxin-responsive protein SAUR24-like2.6e-2870.93Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        M + QLL+R      +GV+ VPKGYCAVYVGE QKKRF+IP++YLNQPCFQ+LL Q+EEEFGYYHPMGGLTI CR+DIFT+LIS +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR231.3e-2154.65Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        +R L + ++  + +   V+  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

Q9FJF7 Auxin-responsive protein SAUR221.7e-2162.86Show/hide
Query:  VAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        V+  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SE+EFG+ HPMGGLTI C ED F N+ S ++
Subjt:  VAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

Q9FJG0 Auxin-responsive protein SAUR201.7e-2156.63Show/hide
Query:  QLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        ++L R +T+     +  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S  +
Subjt:  QLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

Q9FJG1 Auxin-responsive protein SAUR191.7e-2162.34Show/hide
Query:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        S ST  G A  PKG+ AVYVGE QKKR+++P++YL+QP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S ++
Subjt:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

Q9FK62 Auxin-responsive protein SAUR243.5e-2264.94Show/hide
Query:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        S ST  G A  PKG+ AVYVGE QKKR+++PV+YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S ++
Subjt:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

Arabidopsis top hitse value%identityAlignment
AT5G18010.1 SAUR-like auxin-responsive protein family1.2e-2262.34Show/hide
Query:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        S ST  G A  PKG+ AVYVGE QKKR+++P++YL+QP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S ++
Subjt:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

AT5G18020.1 SAUR-like auxin-responsive protein family1.2e-2256.63Show/hide
Query:  QLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        ++L R +T+     +  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S  +
Subjt:  QLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

AT5G18050.1 SAUR-like auxin-responsive protein family1.2e-2262.86Show/hide
Query:  VAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        V+  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SE+EFG+ HPMGGLTI C ED F N+ S ++
Subjt:  VAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE

AT5G18060.1 SAUR-like auxin-responsive protein family9.4e-2354.65Show/hide
Query:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI
        +R L + ++  + +   V+  PKG+ AVYVGE QKKR+++P++YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S +
Subjt:  MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHI

AT5G18080.1 SAUR-like auxin-responsive protein family2.5e-2364.94Show/hide
Query:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE
        S ST  G A  PKG+ AVYVGE QKKR+++PV+YLNQP FQ LLS+SEEEFG+ HPMGGLTI C ED F N+ S ++
Subjt:  STSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATTCTTCAGCTTCTTCGACGACCTTCCACCTCAACAAAGGAAGGAGTTGCAGTAGTTCCAAAGGGCTACTGTGCGGTCTATGTTGGAGAGATCCAAAAGAAGCG
TTTTATCATCCCTGTAACGTACTTGAACCAACCATGTTTTCAAGACTTGCTTAGTCAATCTGAAGAAGAATTTGGTTATTATCATCCTATGGGTGGTCTTACCATTCAGT
GCAGAGAAGATATCTTCACCAATCTCATTTCTCACATTGAATGCAACCTTCTGCCTTGTCAATATTTCTGTCTCCGAAAAATCTCACCCTCCATTTATATAAATGGTCAT
GTAATTGGGTTCACAAGCAAGTCTTTCACTTCACAAGAAAACTCCTTTGATAATACTTCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATTCTTCAGCTTCTTCGACGACCTTCCACCTCAACAAAGGAAGGAGTTGCAGTAGTTCCAAAGGGCTACTGTGCGGTCTATGTTGGAGAGATCCAAAAGAAGCG
TTTTATCATCCCTGTAACGTACTTGAACCAACCATGTTTTCAAGACTTGCTTAGTCAATCTGAAGAAGAATTTGGTTATTATCATCCTATGGGTGGTCTTACCATTCAGT
GCAGAGAAGATATCTTCACCAATCTCATTTCTCACATTGAATGCAACCTTCTGCCTTGTCAATATTTCTGTCTCCGAAAAATCTCACCCTCCATTTATATAAATGGTCAT
GTAATTGGGTTCACAAGCAAGTCTTTCACTTCACAAGAAAACTCCTTTGATAATACTTCAAGTTAA
Protein sequenceShow/hide protein sequence
MRILQLLRRPSTSTKEGVAVVPKGYCAVYVGEIQKKRFIIPVTYLNQPCFQDLLSQSEEEFGYYHPMGGLTIQCREDIFTNLISHIECNLLPCQYFCLRKISPSIYINGH
VIGFTSKSFTSQENSFDNTSS