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Clc02G05235 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G05235
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationClcChr02:4575884..4576420
RNA-Seq ExpressionClc02G05235
SyntenyClc02G05235
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]1.1e-7986.7Show/hide
Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD D+ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]5.3e-7983.59Show/hide
Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD ++ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]3.7e-8087.3Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISPVLAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE D  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_023553634.1 histone H2A.Z-specific chaperone CHZ1-like [Cucurbita pepo subsp. pepo]1.4e-7176.02Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEA+SG SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDLRE+ISPV+ VPISL EDRI   L      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQE-------EDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+E       +D+ DD DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQE-------EDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

XP_038886897.1 uncharacterized protein LOC120077100 [Benincasa hispida]2.0e-7383.16Show/hide
Query:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISGSSSSSS S  FVF DDFEYEFVEDIERLSNWELLDAFDADSEMDGNG EEQGENCSVD RV+EDLREMI     VPISLVEDRIDGSL      
Subjt:  MEAISGSSSSSS-SLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHD-DHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            ED FAYGYND+ EE+E ++ D D DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHD-DHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein1.8e-8087.3Show/hide
Query:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------
        MEAISG SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQG NCSVD  V +DLREMISPVLAVPISLVEDRID SL      
Subjt:  MEAISG-SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL------

Query:  ----EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
            EDGFAYGYNDA+EEDE D  DD DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A1S3BJG2 uncharacterized protein LOC1034903562.6e-7983.59Show/hide
Query:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL
        MEA+SG       SSSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL
Subjt:  MEAISG-------SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL

Query:  ----------EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
                  EDGFAYGY+DA+EEDE DD ++ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ----------EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like5.2e-8086.7Show/hide
Query:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------
        MEA+SG SSSSSS+EFVFYDDFEYEFVEDIERLSNWELLDAFDADSEM GNGGEEQGEN SVD  V +DLREMISPVLAVPISLVEDRIDGSL       
Subjt:  MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL-------

Query:  ---EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
           EDGFAYGY+DA+EEDE DD D+ DEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  ---EDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1C3A5 uncharacterized protein LOC1110075513.2e-6170.1Show/hide
Query:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDG-------
        ME++SG  SSSSSSS+EFVF+DDF++EFV+++ERLSNWE LDA  +D+EMDG+ G+ +G + SVD RV  DLRE +SPV AVPISL EDRID        
Subjt:  MEAISG--SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDG-------

Query:  -SLEDGFAYGYN------DAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
          LEDGFAYGY+      +  EEDE D  DD DE+DLDDELVPWSVS KLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -SLEDGFAYGYN------DAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

A0A6J1I004 uncharacterized protein LOC1114684622.0e-7176.02Show/hide
Query:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL---
        MEA+SG    SSSSSSS+EF FYDDFEYEFVED+ERLSNWE L+A DADSEMDGNGGE++G+NC V AR+ EDL EMISPV+ VPISL EDRI   L   
Subjt:  MEAISG----SSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSL---

Query:  -------EDGFAYGYNDAQEE----DETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY
               EDGFAYGYNDA+E+    D+ DD DD DE DLDDELVPWSVSDKLGRQRMRKLGKRGFT+MYNSKRSPFLFTKPGCVRGKHGLGLKHSY
Subjt:  -------EDGFAYGYNDAQEE----DETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein9.5e-1859.76Show/hide
Query:  GFAYG--YNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK
        G++ G  Y D+  +D  +D +  D +DLD+ELVP SVS K+GRQRMRKLGKR   K+Y SK SPFL  KPG VRGKHGLG+K
Subjt:  GFAYG--YNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLK

AT5G48420.1 unknown protein7.5e-0741.67Show/hide
Query:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK
        +SL ED    S++DG      D  + DE DD D +D+ D D ELV          QR+RK GKR F K    K+  + ++  KPGCV GKHGL +K
Subjt:  ISLVEDRIDGSLEDGFAYGYNDAQEEDETDDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFT--KPGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACGCTAGAGTTCATGAAGATCTTCGAGAGATGA
TTTCTCCTGTTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACC
GATGATCATGATGATCATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTT
TACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAACACAGTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCATTTCTGGATCATCATCTTCTTCTTCTTCTTTGGAATTCGTGTTTTATGATGATTTTGAATACGAATTTGTTGAAGATATCGAACGTCTTTCGAACTGGGA
GTTGCTCGATGCTTTTGATGCCGATTCAGAAATGGACGGAAATGGAGGCGAAGAACAAGGGGAAAACTGCAGCGTTGACGCTAGAGTTCATGAAGATCTTCGAGAGATGA
TTTCTCCTGTTCTCGCGGTGCCGATTTCGCTTGTGGAGGATCGAATCGACGGTTCTTTGGAAGACGGTTTTGCGTACGGTTATAACGATGCGCAGGAGGAGGATGAAACC
GATGATCATGATGATCATGATGAGTTCGATTTGGATGACGAACTCGTTCCGTGGTCTGTCAGTGATAAACTCGGACGGCAGAGGATGAGGAAATTGGGGAAAAGAGGTTT
TACGAAGATGTATAATTCGAAGAGATCTCCGTTTTTGTTCACAAAGCCTGGATGTGTCCGCGGCAAGCACGGACTCGGCTTGAAACACAGTTATTAG
Protein sequenceShow/hide protein sequence
MEAISGSSSSSSSLEFVFYDDFEYEFVEDIERLSNWELLDAFDADSEMDGNGGEEQGENCSVDARVHEDLREMISPVLAVPISLVEDRIDGSLEDGFAYGYNDAQEEDET
DDHDDHDEFDLDDELVPWSVSDKLGRQRMRKLGKRGFTKMYNSKRSPFLFTKPGCVRGKHGLGLKHSY