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Clc02G05430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G05430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein RADIALIS-like 1
Genome locationClcChr02:4917614..4919203
RNA-Seq ExpressionClc02G05430
SyntenyClc02G05430
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.7e-2692.54Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS++A GPSTPWT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]5.6e-2488.06Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

KAG7011710.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2275Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLIAEEMR
        MAS+SA G S+ WT ++NKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIESE+++   M+
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLIAEEMR

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.5e-2185.07Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS+SA G S  WT KQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]2.4e-2285.07Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS+SA G +  WT KQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

TrEMBL top hitse value%identityAlignment
A0A0A0K3K5 SANT domain-containing protein9.3e-2585.92Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLI
        MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIES  LI
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLI

A0A1S3BGF6 protein RADIALIS-like 17.4e-2285.07Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS+SA G S  WT KQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+EDVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

A0A5A7T3V4 Protein RADIALIS-like 11.3e-2692.54Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS++A GPSTPWT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

A0A6J1GKK4 protein RADIALIS-like 11.1e-2285.07Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS+SA G +  WT KQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLL++DVK IES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

A0A6J1GKV1 protein RADIALIS-like 11.6e-2182.09Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS+SA G S+ WT ++NKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIES
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.8e-1867.65Show/hide
Query:  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+
Subjt:  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

Q1A173 Protein RADIALIS-like 61.4e-1771.93Show/hide
Query:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Subjt:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

Q58FS3 Transcription factor RADIALIS7.4e-1965.08Show/hide
Query:  SAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        S  G   PW+ K+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+K+IES
Subjt:  SAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

Q8GW75 Protein RADIALIS-like 58.2e-1864.71Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESE
        MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE +
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESE

Q9SIJ5 Protein RADIALIS-like 26.2e-1867.69Show/hide
Query:  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+
Subjt:  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.8e-1964.71Show/hide
Query:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESE
        MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE +
Subjt:  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESE

AT1G75250.1 RAD-like 69.9e-1971.93Show/hide
Query:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Subjt:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

AT1G75250.2 RAD-like 69.9e-1971.93Show/hide
Query:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Subjt:  TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

AT2G21650.1 Homeodomain-like superfamily protein4.4e-1967.69Show/hide
Query:  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+
Subjt:  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES

AT4G39250.1 RAD-like 12.0e-1967.65Show/hide
Query:  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES
        MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+
Subjt:  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCT
CAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGAGTCATTGATCGCTGAGG
AAATGAGGATGGAGAAACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAATAATAAAAGAAAGAAAGAACCATTTTGTTTTCTTTTTTGTGCCCATTTTAAATCA
TGGACGCAGAGCAGCAACGCGGCGCTGGGAAGGCGCTGCTTCGACGCGTACTTGGTGAACGCAAGACAGCGTCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGTCG
CAACGCTAGCGCCGCGGCGCCAGCGTTAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCT
CAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGAGTCATTGATCGCTGAGG
AAATGAGGATGGAGAAACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAATAATAAAAGAAAGAAAGAACCATTTTGTTTTCTTTTTTGTGCCCATTTTAAATCA
TGGACGCAGAGCAGCAACGCGGCGCTGGGAAGGCGCTGCTTCGACGCGTACTTGGTGAACGCAAGACAGCGTCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGTCG
CAACGCTAGCGCCGCGGCGCCAGCGTTAATTTAA
Protein sequenceShow/hide protein sequence
MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLIAEEMRMEKHEVGLSQFLQCLNNKRKKEPFCFLFCAHFKS
WTQSSNAALGRRCFDAYLVNARQRRGAKTREQLNFGRNASAAAPALI