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Clc02G05445 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G05445
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein RADIALIS-like 1
Genome locationClcChr02:4941221..4942400
RNA-Seq ExpressionClc02G05445
SyntenyClc02G05445
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-3084.42Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPY+NS+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.3e-3285.19Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR
        MASMSAHGS+ WT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPY+NSTRSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]3.6e-3084.42Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPY+NS+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]5.6e-3188.46Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIESGEI FPY++STR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]1.6e-3087.18Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVKHIESGEI FPY++STR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.3e-3388.89Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR
        MASMSAHGSSAWT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+EDV HIESG+IPFPY+ STRSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR

A0A1S3BGF0 protein RADIALIS-like 11.1e-3285.19Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR
        MASMSAHGS+ WT +ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV HIE+G+IPFPY+NSTRSSR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSR

A0A6J1GK35 protein RADIALIS-like 11.8e-3084.42Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST
        MASMS+ GS+AWTPM+NKAFEKALAVYDQDTPERWLNVAKA+G KTEEEVKRHYQLL+ DVKHIESG +PFPY+NS+
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST

A0A6J1GKV1 protein RADIALIS-like 12.7e-3188.46Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVKHIESGEI FPY++STR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR

A0A6J1I8Y0 protein RADIALIS-like 17.9e-3187.18Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR
        MASMSAHGSSAWT  ENKAFEKALAV+DQDTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVKHIESGEI FPY++STR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.6e-2366.2Show/hide
Query:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        +SMS+  S +WT  +NKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP
Subjt:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP

Q1A173 Protein RADIALIS-like 69.3e-2160.98Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P Y+    +SR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR

Q58FS3 Transcription factor RADIALIS1.9e-2161.04Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST
        MAS    G   W+  ENKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+K+IESG++PFP   +T
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNST

Q6NNN0 Protein RADIALIS-like 39.3e-2161.84Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNS
        MAS S   S++WT  ENK FE+ALA YDQDTP+RW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG  P P   S
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNS

Q9SIJ5 Protein RADIALIS-like 23.4e-2363.29Show/hide
Query:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSS
        SMS++GS +WT  +NKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP Y+ +T +S
Subjt:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.3e-2162.5Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        MAS S   SS+WT  +NK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+ +IE   +P P
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP

AT1G75250.1 RAD-like 66.6e-2260.98Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P Y+    +SR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR

AT1G75250.2 RAD-like 66.6e-2260.98Show/hide
Query:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR
        MAS S    S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +P P Y+    +SR
Subjt:  MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSSR

AT2G21650.1 Homeodomain-like superfamily protein2.4e-2463.29Show/hide
Query:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSS
        SMS++GS +WT  +NKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G +PFP Y+ +T +S
Subjt:  SMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP-YQNSTRSS

AT4G39250.1 RAD-like 15.4e-2466.2Show/hide
Query:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP
        +SMS+  S +WT  +NKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G +PFP
Subjt:  ASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCACATGGGTCTAGTGCATGGACTCCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAA
TGTTGCAAAGGCCATTGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTCCCCTATC
AAAACTCTACGAGATCGAGTCGATGTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTGCACATGGGTCTAGTGCATGGACTCCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAA
TGTTGCAAAGGCCATTGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGTGAAATTCCTTTCCCCTATC
AAAACTCTACGAGATCGAGTCGATGTGAGTAACATTCGTAGTTGAAATGAGCCAGCTCATGCAGTATGGAGGAATAAAGGAATGAAGGAAGAAGAACCATTTGCTCTCTA
TTGTACTACCCTTTAAATGTAACTGTAAAGTAGAATTATTGAGAGAATAATATTTATTGGTGTTTTCTTTTTTGAAAAAATGTGAACCATTTTCAATGTATTCAGTTCAT
TAAATACAACTAGATTAATCCATCTATATA
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTPMENKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYQNSTRSSRCE