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Clc02G05480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G05480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr02:5028720..5029197
RNA-Seq ExpressionClc02G05480
SyntenyClc02G05480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036627.1 hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa]9.2e-1853.39Show/hide
Query:  MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLE---------------HMAPQ
        M+++VGVL+IST LIEITKA   I + GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN VD C   K    N+N  G                 ++APQ
Subjt:  MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLE---------------HMAPQ

Query:  SPKEIKGDINIVTHLPYM
        S +E KG  N+VT LPYM
Subjt:  SPKEIKGDINIVTHLPYM

KAE8646139.1 hypothetical protein Csa_016560, partial [Cucumis sativus]1.5e-1559.57Show/hide
Query:  MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS
        M I KKNML+ VGVL+IST LIEITKA     R  G    GVE+VCSPEDPRV+ L+YAN ESSE+N VD C+  K  + N NG    +MAPQS
Subjt:  MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS

TrEMBL top hitse value%identityAlignment
A0A0A0K4C8 Uncharacterized protein2.1e-1557.73Show/hide
Query:  MCIFKKNMLIVVGVLVISTNLIEITKAI---RSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAP-QSPKE
        M I KKNM + VG+L+IST LIEITKA     + GAPQ GVE+VCSPEDPRV+ L+YAN ESSE+N VD C   K    N+N DG     P QSP +
Subjt:  MCIFKKNMLIVVGVLVISTNLIEITKAI---RSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAP-QSPKE

A0A0A0K7P8 Uncharacterized protein7.1e-1659.57Show/hide
Query:  MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS
        M I KKNML+ VGVL+IST LIEITKA     R  G    GVE+VCSPEDPRV+ L+YAN ESSE+N VD C+  K  + N NG    +MAPQS
Subjt:  MCIFKKNMLIVVGVLVISTNLIEITKA----IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQS

A0A5D3BWB1 Uncharacterized protein4.5e-1853.39Show/hide
Query:  MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLE---------------HMAPQ
        M+++VGVL+IST LIEITKA   I + GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN VD C   K    N+N  G                 ++APQ
Subjt:  MLIVVGVLVISTNLIEITKA---IRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLE---------------HMAPQ

Query:  SPKEIKGDINIVTHLPYM
        S +E KG  N+VT LPYM
Subjt:  SPKEIKGDINIVTHLPYM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTATCTTCAAAAAAAACATGTTGATTGTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATTGGAGCTCCTCAAGGAGG
TGTGGAGGTTGTATGTAGCCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATT
ATCAACATAACATCAATGGTGATGGATTGGAACATATGGCTCCTCAAAGCCCAAAAGAAATCAAAGGAGACATAAATATTGTTACTCATCTACCATATATGAATTAA
mRNA sequenceShow/hide mRNA sequence
TATTGATCTCGAGGTTAAGAAGTTCTAGAAATTTATCGTTTGTACCTACTTTTTTCATTGGTTATGTGTATCTTCAAAAAAAACATGTTGATTGTTGTTGGTGTTCTTGT
TATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATTGGAGCTCCTCAAGGAGGTGTGGAGGTTGTATGTAGCCCAGAAGATCCAAGAGTTTACAACCTGA
ATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATTATCAACATAACATCAATGGTGATGGATTGGAACATATGGCTCCTCAA
AGCCCAAAAGAAATCAAAGGAGACATAAATATTGTTACTCATCTACCATATATGAATTAAATAATTAAATTCATGTGGCGACTTCATTCTTTTTCTTTTCAAGGATTCTT
TGATTGTTGTCTTATCCATATATATATAAGTTGCAATG
Protein sequenceShow/hide protein sequence
MCIFKKNMLIVVGVLVISTNLIEITKAIRSIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDYQHNINGDGLEHMAPQSPKEIKGDINIVTHLPYMN