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Clc02G06030 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G06030
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncytochrome b6f complex subunit (petM), putative
Genome locationClcChr02:5691992..5697350
RNA-Seq ExpressionClc02G06030
SyntenyClc02G06030
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572003.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]4.6e-5292.74Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRR R TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_008454894.1 PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]2.2e-5496Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]8.4e-5495.16Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRR R TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]1.2e-5293.55Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSP +STAAPIAAGSRR R  NVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]4.5e-5596Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLSPAM TAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANI+SSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein4.8e-5580.38Show/hide
Query:  PFIFLHTNPLFPILLIIFNFPQFSLPLRHQS--MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSS
        P +FL  NPLFP    +     FSLPL   +  MATASATLS AMS+AAPI+AGSRR RQTN H+I+GLNSF GLKAHNNVVSLGLPVCADQSFA IVSS
Subjt:  PFIFLHTNPLFPILLIIFNFPQFSLPLRHQS--MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSS

Query:  LKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE
        LKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  LKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952011.1e-5496Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1C3G5 uncharacterized protein LOC1110080078.8e-4989.84Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRR-LRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSTCNAAGEIFRIA
        MATASATLSPAMSTAAPIAAGSRR  R  NVHYITGLNSFGGLKAHNNVVSLGLP+C D SFA IVSSLKYPSKGKGK+  GGGALSSTCNAAGEIFRIA
Subjt:  MATASATLSPAMSTAAPIAAGSRR-LRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSTCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEASVEEAE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555038.5e-5291.94Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRR R TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSFA+IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709414.1e-5495.16Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRR R TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)1.2e-0783.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative5.0e-2859.52Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI
        A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        +N L LVGVAVGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative5.0e-2859.52Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI
        A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAI

Query:  INGLVLVGVAVGFVLLRIEASVEEAE
        +N L LVGVAVGFVLLRIE SVEEAE
Subjt:  INGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative1.1e-1140Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII
        A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SLK                               
Subjt:  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
              G  VGFVLLRIE SVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTTGAAGTTGGCTGCAGGTGGTGGTTATCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGATTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATC
CATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAG
CCTCCGCTACCCTTTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCTGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGT
GGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAA
AAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTC
TTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTTGAAGTTGGCTGCAGGTGGTGGTTATCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGATTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATC
CATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAG
CCTCCGCTACCCTTTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCTGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGT
GGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAA
AAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTC
TTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA
Protein sequenceShow/hide protein sequence
MLLKLAAGGGYRRWSLELVVRGIAKFVDATQIPLTLSISPFIFLHTNPLFPILLIIFNFPQFSLPLRHQSMATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFG
GLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE