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Clc02G06170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G06170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontype IV secretion system protein virB10-like
Genome locationClcChr02:5885396..5885989
RNA-Seq ExpressionClc02G06170
SyntenyClc02G06170
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645870.1 hypothetical protein Csa_017149 [Cucumis sativus]2.3e-5890.15Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD
        MSTP+DQLQPPPPLHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD+EDWVEKKCASCLDGSLDPPPPPPHLR PPPL+SVPVAEPL 
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD

Query:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG
        GPPPEIKQ A  D  ADAK ENLQSA PGTGG
Subjt:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG

KAG7011671.1 hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5181.75Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD---PPPPPPHLRRPPPLESVPVAE
        MSTP+DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLD   PPPPPPHLR PPPL++VPV E
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD---PPPPPPHLRRPPPLESVPVAE

Query:  PLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES
        PL G PPEIKQGAD       KRENLQSA PGTGGES
Subjt:  PLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES

XP_008455516.1 PREDICTED: type IV secretion system protein virB10-like [Cucumis melo]7.8e-5989.13Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA
        MSTP+DQLQPPPPLHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVA
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA

Query:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES
        EPL GPPPEIKQGAD    ADAK ENLQSA PGTGGES
Subjt:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES

XP_022972364.1 uncharacterized protein LOC111470940 [Cucurbita maxima]3.5e-5182.58Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD
        MSTP DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLDPPPPP HLR PPPL++VPV EPL 
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD

Query:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG
        G PPEIKQG      AD KRENLQSA PGTGG
Subjt:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG

XP_038887147.1 uncharacterized protein LOC120077337 [Benincasa hispida]3.2e-6091.24Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPL
        MSTPLDQLQPPP LHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDW+EKKCASCLDGSLD PPPPPPHLRRPP L+SVPVAEPL
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPL

Query:  DGPPPEIKQGADPD--VEADAKRENLQSAPPGTGGES
         GPPPEIKQGAD D  V+ D KRENLQSAPPGTGGES
Subjt:  DGPPPEIKQGADPD--VEADAKRENLQSAPPGTGGES

TrEMBL top hitse value%identityAlignment
A0A0A0K6N4 Uncharacterized protein1.3e-5990.3Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD
        MSTP+DQLQPPPPLHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD+EDWVEKKCASCLDGSLDPPPPPPHLR PPPL+SVPVAEPL 
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD

Query:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGGES
        GPPPEIKQ A  D  ADAK ENLQSA PGTGGES
Subjt:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGGES

A0A1S3C1T9 type IV secretion system protein virB10-like3.8e-5989.13Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA
        MSTP+DQLQPPPPLHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVA
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA

Query:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES
        EPL GPPPEIKQGAD    ADAK ENLQSA PGTGGES
Subjt:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES

A0A5A7SPN0 Type IV secretion system protein virB10-like3.8e-5989.13Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA
        MSTP+DQLQPPPPLHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVA
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVA

Query:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES
        EPL GPPPEIKQGAD    ADAK ENLQSA PGTGGES
Subjt:  EPLDGPPPEIKQGADPDVEADAKRENLQSAPPGTGGES

A0A6J1GL66 uncharacterized protein LOC1114553832.5e-5081.95Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPL
        MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLD PPPPPPHLR PPPL++VPV EPL
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPL

Query:  DGPPPEIKQGADPDVEADAKRENLQSAPPGTGG
         G PPEIKQGAD       KRENLQSA PGTGG
Subjt:  DGPPPEIKQGADPDVEADAKRENLQSAPPGTGG

A0A6J1IBA8 uncharacterized protein LOC1114709401.7e-5182.58Show/hide
Query:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD
        MSTP DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE+WVEKKCASCLDGSLDPPPPP HLR PPPL++VPV EPL 
Subjt:  MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLD

Query:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG
        G PPEIKQG      AD KRENLQSA PGTGG
Subjt:  GPPPEIKQGADPDVEADAKRENLQSAPPGTGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26520.1 unknown protein1.8e-1338.64Show/hide
Query:  QPPPPLH----------SAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEP
        QPPP             + ++++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD+E W E +C SC+DG + P  P P    PPP +  P+   
Subjt:  QPPPPLH----------SAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEP

Query:  LDGPPPEIK-QGADPDVEADA-KRENLQSAPP
          G   E +   AD D E D  K+++L   PP
Subjt:  LDGPPPEIK-QGADPDVEADA-KRENLQSAPP

AT3G57500.1 unknown protein2.0e-1244.21Show/hide
Query:  QPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDG-----SLDPPPPPPHLRRPPPLESVPVAEP
        Q  P  +S H S+  L+ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WVE+KC SC+D      S  P PPPP    PPP  +   ++P
Subjt:  QPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDG-----SLDPPPPPPHLRRPPPLESVPVAEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACTCCCCTCGACCAGCTCCAGCCCCCGCCGCCCCTCCACTCCGCCCACGCCTCCGTCGGCCCACTCATCGCCGTCCTCGCCGTCATTTCCATCCTCGGCGTCAT
TGCCGGCATGATTGGCCGCCTCTGCTCCGGCCGCCCTGTCTTTGGCTACGGTGCCCACTACGACGTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGACGGCT
CCCTCGACCCTCCTCCTCCGCCGCCGCACCTCCGCCGCCCACCGCCGCTCGAATCTGTTCCTGTGGCTGAACCGCTTGATGGGCCACCACCGGAGATCAAGCAAGGTGCC
GATCCCGATGTGGAGGCCGATGCTAAACGCGAGAATTTGCAGTCGGCGCCTCCTGGAACCGGCGGTGAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ACAAGACTCACAATGGCCATAAAGTCACGCCACGTCTTTAGTGTTTCACTTGTTCTCTATTTCCTTCCGACATCTCTCAACCATCAGTCTCTTCTCTAAACCCAAAAACC
AAAAATCCCTTTCCGCTCCGCCGCCGCTTCATTCTAACTCCCTCCCATGTCCACTCCCCTCGACCAGCTCCAGCCCCCGCCGCCCCTCCACTCCGCCCACGCCTCCGTCG
GCCCACTCATCGCCGTCCTCGCCGTCATTTCCATCCTCGGCGTCATTGCCGGCATGATTGGCCGCCTCTGCTCCGGCCGCCCTGTCTTTGGCTACGGTGCCCACTACGAC
GTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGACGGCTCCCTCGACCCTCCTCCTCCGCCGCCGCACCTCCGCCGCCCACCGCCGCTCGAATCTGTTCCTGT
GGCTGAACCGCTTGATGGGCCACCACCGGAGATCAAGCAAGGTGCCGATCCCGATGTGGAGGCCGATGCTAAACGCGAGAATTTGCAGTCGGCGCCTCCTGGAACCGGCG
GTGAGTCGTGAGATTTAATAAGAAGAGTAAAGTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MSTPLDQLQPPPPLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQGA
DPDVEADAKRENLQSAPPGTGGES