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Clc02G06275 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G06275
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionATP synthase subunit a, chloroplastic
Genome locationClcChr02:6045828..6047617
RNA-Seq ExpressionClc02G06275
SyntenyClc02G06275
Gene Ontology termsGO:0015986 - ATP synthesis coupled proton transport (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component)
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domainsIPR000568 - ATP synthase, F0 complex, subunit A
IPR023011 - ATP synthase, F0 complex, subunit A, active site
IPR035908 - ATP synthase, F0 complex, subunit A superfamily
IPR045082 - ATP synthase, F0 complex, subunit A, bacterial/chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEJ10108.1 ATP synthase CF0 subunit IV [Centrolepis monogyna]5.9e-2986.96Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        KR +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

ASD46843.1 ATP synthase CF0 subunit IV, partial [Triticum timopheevii]5.9e-2984.78Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ ++ FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLV+P PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

QUT08812.1 ATP synthase CF0 subunit IV [Sinojackia microcarpa]4.5e-2992.77Show/hide
Query:  PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEGRAKPHA
        PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG    H+
Subjt:  PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEGRAKPHA

YP_009540193.1 ATPase a subunit [Ricotia aucheri]4.5e-2993.9Show/hide
Query:  FTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        +T   PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  FTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

YP_009922972.1 ATP synthase CF0 subunit IV [Beckmannia syzigachne]2.0e-2986.02Show/hide
Query:  RKRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        RK+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  RKRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

TrEMBL top hitse value%identityAlignment
A0A023INB5 ATP synthase CF0 subunit IV2.8e-2985.71Show/hide
Query:  RKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        +K   + R +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  RKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

A0A075W0T1 ATP synthase subunit a, chloroplastic2.8e-2984.78Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ ++ FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLV+P PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

A0A218M1U3 ATP synthase subunit a, chloroplastic2.8e-2984.78Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ ++ FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLV+P PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

A0A3S7WDS6 ATP synthase subunit a, chloroplastic2.2e-2993.9Show/hide
Query:  FTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        +T   PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  FTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

A0A7G6KH47 ATP synthase CF0 subunit IV9.7e-3086.02Show/hide
Query:  RKRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        RK+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  RKRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

SwissProt top hitse value%identityAlignment
A1EA02 ATP synthase subunit a, chloroplastic1.0e-3185.87Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

A8Y9G4 ATP synthase subunit a, chloroplastic1.0e-3185.87Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

B3TN45 ATP synthase subunit a, chloroplastic1.0e-3185.87Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

P0C2Y5 ATP synthase subunit a, chloroplastic1.0e-3185.87Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

P17344 ATP synthase subunit a, chloroplastic1.0e-3185.87Show/hide
Query:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        K+ +  FE+ +    PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  KRKVKPFERGFTTNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG

Arabidopsis top hitse value%identityAlignment
ATCG00150.1 ATPase, F0 complex, subunit A protein9.3e-3398.7Show/hide
Query:  PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG
        PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVP PVMFLGLFTSGIQALIFATLAAAYIGESMEG
Subjt:  PILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAATGTTGGCCATCTTTTCTTAAGCCTCAGGCTGTGTTAAAGCAGGTTGAATGGATCATAGAAGGACAGAGTGAAGCGACCCAACAAGCAACGGACTTATCACA
TAGGTCTGTCAAGTGCTATTTCCCGGTCGTCCAATGGTCTTTAGTCGTTATTAAGCCTGGTATGCCTCCGCCCTGTGTCCACAATTCCAGACCTTCAATCCTCGATCATC
CCCTGGGCTTAGTTCACATGTTCTTGCTTAGTTCGTATTCCGGGCGCTTCTTCCGCGAGATTTATCCTTATAGAAAAAGAAAGGTCAAACCCTTTGAAAGAGGGTTTACA
ACCAACTTTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGT
TGTTCTTGTTTCTTTAGTACCTTTAGTAGTTCCTAAACCTGTTATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTCTGATTTTTGCAACTTTAGCTGCAGCTTATA
TAGGCGAATCCATGGAGGGAAGGGCTAAGCCTCATGCTAGTCTATCTTCACAGTTGAACTCCTGTACGTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACAATGTTGGCCATCTTTTCTTAAGCCTCAGGCTGTGTTAAAGCAGGTTGAATGGATCATAGAAGGACAGAGTGAAGCGACCCAACAAGCAACGGACTTATCACA
TAGGTCTGTCAAGTGCTATTTCCCGGTCGTCCAATGGTCTTTAGTCGTTATTAAGCCTGGTATGCCTCCGCCCTGTGTCCACAATTCCAGACCTTCAATCCTCGATCATC
CCCTGGGCTTAGTTCACATGTTCTTGCTTAGTTCGTATTCCGGGCGCTTCTTCCGCGAGATTTATCCTTATAGAAAAAGAAAGGTCAAACCCTTTGAAAGAGGGTTTACA
ACCAACTTTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGT
TGTTCTTGTTTCTTTAGTACCTTTAGTAGTTCCTAAACCTGTTATGTTCCTTGGATTATTTACAAGTGGTATTCAAGCTCTGATTTTTGCAACTTTAGCTGCAGCTTATA
TAGGCGAATCCATGGAGGGAAGGGCTAAGCCTCATGCTAGTCTATCTTCACAGTTGAACTCCTGTACGTACTAA
Protein sequenceShow/hide protein sequence
MSQCWPSFLKPQAVLKQVEWIIEGQSEATQQATDLSHRSVKCYFPVVQWSLVVIKPGMPPPCVHNSRPSILDHPLGLVHMFLLSSYSGRFFREIYPYRKRKVKPFERGFT
TNFPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPKPVMFLGLFTSGIQALIFATLAAAYIGESMEGRAKPHASLSSQLNSCTY