; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G06985 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G06985
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr02:7063490..7066292
RNA-Seq ExpressionClc02G06985
SyntenyClc02G06985
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-5029.23Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ +  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E D LW+ LI   Y     GS PS   F S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VK+ WN + + W+    RPL D E          + TP+        LWNL    +F   S+K+ ++ +   P   HP+L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYN----------------------FVVESAQ----------------------------SPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +                       ++   +Q                            +P+ +   I +  SL    ++  +  N     LW
Subjt:  --VWRNFYN----------------------FVVESAQ----------------------------SPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K+ + LWED L+   LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.2e-5330.33Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E + LW+ LI   Y     G  PS   + S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VKD WN +   WN    RPL D E          + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +  +                                                  ++   +P+ +     +  SL   T++  +  N I   LW
Subjt:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K  + LWEDIL+ + LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-5230.33Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E + LW+ LI   Y     G  PS   + S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VKD WN +   WN    RPL D E          + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +  +                                                  ++   +P+ +     +  SL   T++  +  N I   LW
Subjt:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K  + LWEDIL+ + LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-5232.74Show/hide
Query:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK
        NPK + FW  I  RI KKLS+W+ + ISKGGRLTLI++ LSS                 ++E+L RNFLWK      GSHL+ W  VT+PK++GG+GI +
Subjt:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK

Query:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI
        +++TN+ALL KW+WRY  EP+ LWR LI   Y    PG +PS  +  S++AP                     G  I FW+ NW          PR + +
Subjt:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI

Query:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--------PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS--------------------------
        S +K  ++KD WNSN + W  +FRR L DRE+ T        PI      P    W    K  F+I S K  +S                          
Subjt:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--------PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS--------------------------

Query:  --------ASRNL----------PN-----------------HPDLTQVWRNFYNFVVESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWL
                  R L          PN                 H DL +   +  +  +  A            F SL  +  +  ++   + A LW +W 
Subjt:  --------ASRNL----------PN-----------------HPDLTQVWRNFYNFVVESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWL

Query:  ERNNRTFHDGS--KSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNAF
        ERNNR F   S  KS   LWED   L   W  + P   NYS A+I+LN NAF
Subjt:  ERNNRTFHDGS--KSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNAF

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.2e-4930.33Show/hide
Query:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK
        NP+   FWD  I+ I KKL+ W+ S ISKGGRLTL++A LSS                  +E+  R+FLW    ++  +HL+ W+  T PK+ GG+GI K
Subjt:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK

Query:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI
        ++ TN+ALL KW+WRY  E + LW+  ID  Y     G IP +    SA +P                     GS++ FWH  W   I   +  PR Y +
Subjt:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI

Query:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQTEEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN-----
        S  +  TVK+ W+     WN   RRPL +RE QT   I+   P I          WN  D   +T+ S K       ++P       +L  +WR+     
Subjt:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQTEEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN-----

Query:  ----FYNFVVESAQSPSSIAEAIHSFS---------------------------------------SLKHTTKRRTLLQ----------NLIG-----AT
             +  V +   +  +I +   S S                                        + +T  +   LQ          N+I      AT
Subjt:  ----FYNFVVESAQSPSSIAEAIHSFS---------------------------------------SLKHTTKRRTLLQ----------NLIG-----AT

Query:  LWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNA
        LWT+W+ RNN  F D   S    WEDI +L+  W  KS    NYS A+I+LN  A
Subjt:  LWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNA

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.1e-5029.23Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD ++++I KKLS+W+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ +  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E D LW+ LI   Y     GS PS   F S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VK+ WN + + W+    RPL D E          + TP+        LWNL    +F   S+K+ ++ +   P   HP+L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYN----------------------FVVESAQ----------------------------SPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +                       ++   +Q                            +P+ +   I +  SL    ++  +  N     LW
Subjt:  --VWRNFYN----------------------FVVESAQ----------------------------SPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K+ + LWED L+   LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein3.0e-5330.33Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E + LW+ LI   Y     G  PS   + S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VKD WN +   WN    RPL D E          + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +  +                                                  ++   +P+ +     +  SL   T++  +  N I   LW
Subjt:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K  + LWEDIL+ + LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.7e-5330.33Show/hide
Query:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV
        P  S FWD I+++I KKLSSW+ S +SKGGR+TLI + L S                  +E   RNFLW    N +   L+RW+ V  PK+KGG+GI  V
Subjt:  PKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKV

Query:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS
          TN ALL KW+W+++ E + LW+ LI   Y     G  PS   + S  +P      C              G +I FW  NW+G     +  PR + +S
Subjt:  RITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAP------C--------------GSNILFWHHNWDGGIAKRITCPRFYNIS

Query:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------
         NK  +VKD WN +   WN    RPL D E          + TP+    P   LW L    +F   S+K+ LS +   P   HP L +            
Subjt:  ENKVITVKDAWNSNQSSWNPSFRRPLLDRE----------MQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPN--HPDLTQ------------

Query:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW
          +W   +  +                                                  ++   +P+ +     +  SL   T++  +  N I   LW
Subjt:  --VWRNFYNFV--------------------------------------------------VESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLW

Query:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL
         +WLERNNR F    K  + LWEDIL+ + LW CK     NY   SI+LN +AF+
Subjt:  TVWLERNNRTFHDGSKSQRQLWEDILSLSSLW-CKKSPDCNYSIASISLNWNAFL

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein4.5e-4930.33Show/hide
Query:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK
        NP+   FWD  I+ I KKL+ W+ S ISKGGRLTL++A LSS                  +E+  R+FLW    ++  +HL+ W+  T PK+ GG+GI K
Subjt:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK

Query:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI
        ++ TN+ALL KW+WRY  E + LW+  ID  Y     G IP +    SA +P                     GS++ FWH  W   I   +  PR Y +
Subjt:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI

Query:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQTEEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN-----
        S  +  TVK+ W+     WN   RRPL +RE QT   I+   P I          WN  D   +T+ S K       ++P       +L  +WR+     
Subjt:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--PIQTEEPDI--------ILWNLGDKGLFTIKSLKQYLSASRNLPN----HPDLTQVWRN-----

Query:  ----FYNFVVESAQSPSSIAEAIHSFS---------------------------------------SLKHTTKRRTLLQ----------NLIG-----AT
             +  V +   +  +I +   S S                                        + +T  +   LQ          N+I      AT
Subjt:  ----FYNFVVESAQSPSSIAEAIHSFS---------------------------------------SLKHTTKRRTLLQ----------NLIG-----AT

Query:  LWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNA
        LWT+W+ RNN  F D   S    WEDI +L+  W  KS    NYS A+I+LN  A
Subjt:  LWTVWLERNNRTFHDGSKSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNA

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein1.5e-5232.74Show/hide
Query:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK
        NPK + FW  I  RI KKLS+W+ + ISKGGRLTLI++ LSS                 ++E+L RNFLWK      GSHL+ W  VT+PK++GG+GI +
Subjt:  NPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDK

Query:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI
        +++TN+ALL KW+WRY  EP+ LWR LI   Y    PG +PS  +  S++AP                     G  I FW+ NW          PR + +
Subjt:  VRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPC--------------------GSNILFWHHNWDGGIAKRITCPRFYNI

Query:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--------PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS--------------------------
        S +K  ++KD WNSN + W  +FRR L DRE+ T        PI      P    W    K  F+I S K  +S                          
Subjt:  SENKVITVKDAWNSNQSSWNPSFRRPLLDREMQT--------PI--QTEEPDIILWNLGDKGLFTIKSLKQYLS--------------------------

Query:  --------ASRNL----------PN-----------------HPDLTQVWRNFYNFVVESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWL
                  R L          PN                 H DL +   +  +  +  A            F SL  +  +  ++   + A LW +W 
Subjt:  --------ASRNL----------PN-----------------HPDLTQVWRNFYNFVVESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWL

Query:  ERNNRTFHDGS--KSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNAF
        ERNNR F   S  KS   LWED   L   W  + P   NYS A+I+LN NAF
Subjt:  ERNNRTFHDGS--KSQRQLWEDILSLSSLWCKKSPDC-NYSIASISLNWNAF

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.9e-1432.79Show/hide
Query:  IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLG
        I++R+  ++S W+   +S  GRLTL +AVLSS                  +++L R FLW     +   HLV+W  V  PK +GG+G+   +  N AL+ 
Subjt:  IIKRIDKKLSSWQLSFISKGGRLTLIQAVLSS-----------------SVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKGGIGIDKVRITNEALLG

Query:  KWIWRYVPEPDQLWRSLIDGIY
        K  WR + E + LW  ++   Y
Subjt:  KWIWRYVPEPDQLWRSLIDGIY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGCGGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCA
GAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGA
GTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGT
GGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTAT
ATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAA
TTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGA
AGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCA
GTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCCAGTCTCCTTCCTCTATAGCAG
AAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGG
ACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTAT
CTCCCTCAATTGGAATGCTTTTCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGCGGATTTCCTTTGAGGATGTTTTTCCTTTTCGGGCATGCGTATTTAATGGCAATATGGAGCTTTGCTAGGGATGTGGAGATTATTGAATGCAATCCTAAGCA
GAGTGGTTTTTGGGATCCCATCATTAAGCGTATAGATAAAAAGCTCTCCTCCTGGCAGCTTTCTTTCATCTCCAAAGGTGGCAGACTTACCCTGATTCAGGCGGTCCTGA
GTAGCTCCGTTGAAAGGCTGATGAGAAACTTCCTTTGGAAAGACTTTGGAAATCAAAATGGCTCTCATCTAGTGAGATGGGATTTTGTCACTCGTCCAAAAGACAAAGGT
GGTATCGGCATTGACAAAGTTAGAATTACAAATGAAGCTCTCCTAGGGAAGTGGATTTGGAGATATGTCCCAGAACCCGATCAGTTATGGAGATCCCTTATTGATGGTAT
ATATGCAACCTGCACTCCTGGATCAATTCCCAGCTTGAACAACTTTGGTAGTGCCAGAGCTCCTTGTGGATCAAACATTCTGTTTTGGCACCACAATTGGGATGGAGGAA
TTGCGAAAAGAATCACCTGTCCAAGATTTTACAACATCTCCGAAAATAAGGTTATCACTGTAAAAGATGCCTGGAACTCCAATCAAAGCAGTTGGAATCCGTCCTTTAGA
AGGCCCCTCTTGGACAGAGAGATGCAGACTCCAATTCAAACAGAGGAACCGGACATAATCCTCTGGAACCTGGGCGATAAAGGTTTGTTCACCATTAAATCTTTAAAGCA
GTATCTGTCAGCTAGCAGAAATTTGCCCAATCACCCGGATTTAACTCAAGTTTGGAGGAATTTTTATAACTTTGTCGTCGAATCAGCCCAGTCTCCTTCCTCTATAGCAG
AAGCTATTCACTCCTTCTCATCCCTCAAGCACACAACAAAAAGAAGAACTTTGTTGCAAAACTTGATTGGTGCTACCCTCTGGACTGTTTGGCTGGAAAGAAACAACAGG
ACCTTCCATGATGGCAGCAAATCCCAAAGGCAATTGTGGGAAGATATCCTAAGCCTCTCTTCCCTTTGGTGTAAAAAATCACCTGATTGTAACTATAGCATTGCTAGTAT
CTCCCTCAATTGGAATGCTTTTCTGTAG
Protein sequenceShow/hide protein sequence
MARGFPLRMFFLFGHAYLMAIWSFARDVEIIECNPKQSGFWDPIIKRIDKKLSSWQLSFISKGGRLTLIQAVLSSSVERLMRNFLWKDFGNQNGSHLVRWDFVTRPKDKG
GIGIDKVRITNEALLGKWIWRYVPEPDQLWRSLIDGIYATCTPGSIPSLNNFGSARAPCGSNILFWHHNWDGGIAKRITCPRFYNISENKVITVKDAWNSNQSSWNPSFR
RPLLDREMQTPIQTEEPDIILWNLGDKGLFTIKSLKQYLSASRNLPNHPDLTQVWRNFYNFVVESAQSPSSIAEAIHSFSSLKHTTKRRTLLQNLIGATLWTVWLERNNR
TFHDGSKSQRQLWEDILSLSSLWCKKSPDCNYSIASISLNWNAFL