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Clc02G07010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGRF-type domain-containing protein
Genome locationClcChr02:7089756..7090288
RNA-Seq ExpressionClc02G07010
SyntenyClc02G07010
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645848.1 hypothetical protein Csa_017077 [Cucumis sativus]1.6e-6084.4Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDED
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRDD+D++
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDED

KAF2294607.1 hypothetical protein GH714_013386 [Hevea brasiliensis]1.4e-3753.74Show/hide
Query:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTL
        L  +E+S + C CG+PAKLR+SQT +NPFRL YNCP+  + QCGFF W DE  P  DRH +E++LIRN C RL  R +EIE+ HE++++ WEREK+EL L
Subjt:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTL

Query:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDAFVIYNL
        KLS +QT+LD+I  R+R  NES  MPPL ++   +DE DD   I+ +
Subjt:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDAFVIYNL

XP_004136954.1 uncharacterized protein LOC101219463 [Cucumis sativus]8.4e-6282.67Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRD  D+DD+  VIY L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

XP_008455003.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]2.4e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D  V+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

XP_022148840.1 uncharacterized protein LOC111017399 [Momordica charantia]8.9e-5675.68Show/hide
Query:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLK
        EI+EES LECYCG+PAKLR SQT KNPFRL YNCPKEISQQCGFFHWADE EP DDRH  EL+LIRNVC+ L +R +EIEEEH++EKAEWER+K ELTL+
Subjt:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLK

Query:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        L  LQ+QLDDI +RIRM NESFSMPP   LSIRD  DE DDA VIY L
Subjt:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

TrEMBL top hitse value%identityAlignment
A0A0A0K2H6 GRF-type domain-containing protein4.0e-6282.67Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        LKLS LQTQLDDIHNR+R+TNESFSMPP   LSIRD  D+DD+  VIY L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

A0A1S4E0B8 uncharacterized protein LOC1034952841.2e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D  V+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

A0A5A7SJM5 GRF-type domain-containing protein1.2e-6182Show/hide
Query:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT
        S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRHANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELT
Subjt:  SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELT

Query:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        LKLS LQTQLDDI+NRIR+TNESFSMPP   LSIRDD D+++D  V+Y L
Subjt:  LKLSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

A0A6A6L2I8 GRF-type domain-containing protein6.9e-3853.74Show/hide
Query:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTL
        L  +E+S + C CG+PAKLR+SQT +NPFRL YNCP+  + QCGFF W DE  P  DRH +E++LIRN C RL  R +EIE+ HE++++ WEREK+EL L
Subjt:  LEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTL

Query:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDAFVIYNL
        KLS +QT+LD+I  R+R  NES  MPPL ++   +DE DD   I+ +
Subjt:  KLSALQTQLDDIHNRIRMTNESFSMPPL-SIRDDEDEDDDAFVIYNL

A0A6J1D427 uncharacterized protein LOC1110173994.3e-5675.68Show/hide
Query:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLK
        EI+EES LECYCG+PAKLR SQT KNPFRL YNCPKEISQQCGFFHWADE EP DDRH  EL+LIRNVC+ L +R +EIEEEH++EKAEWER+K ELTL+
Subjt:  EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLK

Query:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL
        L  LQ+QLDDI +RIRM NESFSMPP   LSIRD  DE DDA VIY L
Subjt:  LSALQTQLDDIHNRIRMTNESFSMPP---LSIRDDEDEDDDAFVIYNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTGTTGTACAACTG
TCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTC
GTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAG
CTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAA
TTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTGTTGTACAACTG
TCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTC
GTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAG
CTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAA
TTTGTAA
Protein sequenceShow/hide protein sequence
MSLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQ
LDDIHNRIRMTNESFSMPPLSIRDDEDEDDDAFVIYNL