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Clc02G07090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGibberellin-regulated family protein
Genome locationClcChr02:7173828..7175583
RNA-Seq ExpressionClc02G07090
SyntenyClc02G07090
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044354.1 peamaclein-like [Cucumis melo var. makuwa]3.7e-1754.02Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++F      CFLL ++SF+DTV A    C + C+KRCS+A +K RCMKYC ICC  CKCVP G+YG KH CPCY  + + +GR KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

KAE8008067.1 hypothetical protein FH972_004614 [Carpinus fangiana]4.9e-1760.49Show/hide
Query:  LFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  C LLLS+SF++ VMA S  CT  C  RCSKA +K RCMKYC ICC +CKCVP G+YG KH CPCY      +G+AKCP
Subjt:  LFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

KAE8649034.1 hypothetical protein Csa_014887 [Cucumis sativus]8.3e-1754.02Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++FL     CFLL ++SF+D V A    C + C+KRCSKA +K RC+KYC ICC  CKCVP G+YG KH CPCY  + + +GR KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

KAG6588701.1 Snakin-1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-2885.07Show/hide
Query:  MDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        M+T MA +DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG+YGK HCPCYSHVHTLRGRAKCP
Subjt:  MDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

KAG7022485.1 Snakin-1 [Cucurbita argyrosperma subsp. argyrosperma]6.1e-3681.82Show/hide
Query:  MRTQIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        MR QI ++G F CFLLLSASFM+T MA +DVCTRPCRKRCS AKLKR+CMK+CRICC KCKCVPG+YGK HCPCYSHVHTLRGRAKCP
Subjt:  MRTQIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

TrEMBL top hitse value%identityAlignment
A0A0A0K2Z1 Uncharacterized protein1.5e-4090.91Show/hide
Query:  MRTQIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP
        MRT + LLGLFFCFLLLSASFMDT MADSD CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPG YGK HCPCYSHVHT+RGRAKCP
Subjt:  MRTQIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

A0A2I0KSA4 peamaclein-like9.0e-1753.57Show/hide
Query:  LLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  +  C  LLS++FM+ VMA S  CT+ C +RC KA +K RC+KYC ICC++CKCVP G+YG KH CPCY      +G+ KCP
Subjt:  LLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A4U5QDN8 Uncharacterized protein1.2e-1651.72Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++FL  L  C LL S+SF++ VMA S  CT+ C  RC+ A ++ RC+KYC ICC +CKCVP G+YG KH CPCY      +G+ KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A5D3E0A6 Peamaclein-like1.8e-1754.02Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++F      CFLL ++SF+DTV A    C + C+KRCS+A +K RCMKYC ICC  CKCVP G+YG KH CPCY  + + +GR KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

A0A5N6QLL9 Uncharacterized protein2.4e-1760.49Show/hide
Query:  LFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        L  C LLLS+SF++ VMA S  CT  C  RCSKA +K RCMKYC ICC +CKCVP G+YG KH CPCY      +G+AKCP
Subjt:  LFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

SwissProt top hitse value%identityAlignment
C0HLQ1 Cypmaclein1.9e-1152.54Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYG-KHHCPCYSHVHTLRGRAKCP
        C + C +RCSKA    RC+KYC ICC KC CV PG+YG +  CPCY+++   +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYG-KHHCPCYSHVHTLRGRAKCP

O80641 Gibberellin-regulated protein 81.4e-1144.83Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++ ++  F   LLL++SF     ADS  C   C  RCSKA     C+KYC ICC KC CVP G++G K  CPCY  +   +G +KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

P86888 Peamaclein1.9e-1153.23Show/hide
Query:  SDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        S  C   C  RCSKA  + RC+KYC ICC KC CVP G+YG K  CPCY  +   +G  KCP
Subjt:  SDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Q8LFM2 Gibberellin-regulated protein 104.9e-1249.35Show/hide
Query:  LLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        LL+++S      ADS  C   C  RCSKA  + RC+KYC ICC KC  CVP G+YG K  CPCY  +   +G +KCP
Subjt:  LLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Q948Z4 Snakin-15.1e-1750.57Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++FLL L    L+++ S + T MA S  C   C+ RCSKA L  RC+KYC ICC +CKCVP G+YG KH CPCY      +G++KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

Arabidopsis top hitse value%identityAlignment
AT2G14900.1 Gibberellin-regulated family protein3.3e-1150.85Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        C + C  RC +A +K RC+KYC ICC  C+CVP G+YG KH C CY    + +G  KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

AT2G39540.1 Gibberellin-regulated family protein1.0e-1244.83Show/hide
Query:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        ++ ++  F   LLL++SF     ADS  C   C  RCSKA     C+KYC ICC KC CVP G++G K  CPCY  +   +G +KCP
Subjt:  QIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP

AT4G09600.1 GAST1 protein homolog 38.0e-1038.95Show/hide
Query:  RTQIFLLGLFFC---FLLLSASFMDTVMADSDV---CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP
        R+ + LL + FC   F L   +  D+ + +  V   C   C+ RCSK+     C++ C  CC +C CV PG+ G HH CPCY+ + T  GR KCP
Subjt:  RTQIFLLGLFFC---FLLLSASFMDTVMADSDV---CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP

AT4G09610.1 GAST1 protein homolog 28.0e-1047.46Show/hide
Query:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP
        C   C+ RCSK+   + C++ C  CCS+C CV PG+ G  H CPCY+ + T  GR KCP
Subjt:  CTRPCRKRCSKAKLKRRCMKYCRICCSKCKCV-PGSYGKHH-CPCYSHVHTLRGRAKCP

AT5G59845.1 Gibberellin-regulated family protein3.5e-1349.35Show/hide
Query:  LLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP
        LL+++S      ADS  C   C  RCSKA  + RC+KYC ICC KC  CVP G+YG K  CPCY  +   +G +KCP
Subjt:  LLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCK-CVP-GSYG-KHHCPCYSHVHTLRGRAKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTCAGATTTTTCTTCTCGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGACACCGTCATGGCCGACTCTGATGTGTGCACAAGACCGTGCAG
GAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGTAGGATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTT
GCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAGTCCACGCGCTTGGATTTATGAATTGAGTTTAGAATTCTCCAACTCTCTCTCTCTGTTTCTTGTTTAAAAGCACTTACTCCACAAACTCCTTTGTGCTTTGTTGAGA
AACAAATCTGAGATTTCATTTCTCTAATCTGAAAGATCAAAGATGAGAACTCAGATTTTTCTTCTCGGTTTGTTCTTCTGTTTTCTTCTCTTAAGTGCTTCTTTCATGGA
CACCGTCATGGCCGACTCTGATGTGTGCACAAGACCGTGCAGGAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGTAGGATATGTTGTAGTAAAT
GCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAATTTTAAGACCATTTATTGTCC
CTTGTAAAACAAACCACCTAAATATTATTACAAGGACACCAATAATTTTGTGTCTCAATTAAATACTAATGCTTCAAAGTTTGAATGTGAGGTTTGGTATGTTTTTTAAT
ACACAATGTGTACTTATGAGATCTACCTTATTTTATTTTATTATTTAAGGCCCTCTTCTATTCTATCTATGTATACCTAAAAGATCCTATGGTTGTTGGGTTTTCATTCA
ATAAAAAAGTATATAAGATTGTTAGTTTTCTTCCATAATTTGTTTGGTC
Protein sequenceShow/hide protein sequence
MRTQIFLLGLFFCFLLLSASFMDTVMADSDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP