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Clc02G07120 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07120
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSWIB domain-containing protein
Genome locationClcChr02:7234935..7237150
RNA-Seq ExpressionClc02G07120
SyntenyClc02G07120
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5986.23Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGEPSLLVA+A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]7.0e-6086.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGEPSLLVA+A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]2.6e-5986.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGE SLL+A+A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]7.0e-6086.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGEPSLLVA+A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIW HIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KP+DKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]6.7e-6392.75Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M F+STFISGEPSLLV KA  TA+SVK P QLPLPNLRFARTVTFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

TrEMBL top hitse value%identityAlignment
A0A6J1D4Q4 uncharacterized protein LOC1110172916.6e-5674.1Show/hide
Query:  SSYRSYRF-TFALSIFRTQKHNLSSLPAMTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEM
        S  RS+RF TFALS+  T   +L    AM FVSTF SGEP+LLVA+A  +ASS+KH  QLP  NLRF R VTFA+AS+QATASRR+PRGIMKPR +SPEM
Subjt:  SSYRSYRF-TFALSIFRTQKHNLSSLPAMTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEM

Query:  QALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        QALVG PEISRTQALKVIW HIKEHNLQ+P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Subjt:  QALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1EIX1 uncharacterized protein LOC1114346992.4e-5886.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTFISGE SLL  +A  T SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPRGIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1GL33 uncharacterized protein LOC1114552443.4e-6086.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGEPSLLVA+A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPRGIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1IAA1 uncharacterized protein LOC1114710821.3e-5986.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTF+SGE SLL+A+A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPRGIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1JNZ3 uncharacterized protein LOC1114861971.4e-5886.96Show/hide
Query:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        M FVSTFISGE SLL  +A  T+SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPRGIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp279.0e-1045.45Show/hide
Query:  KPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF
        KP ++SP++   +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Subjt:  KPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF

Q05024 Protein TRI16.9e-1050Show/hide
Query:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK
        +S  +Q  +G+ E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Subjt:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK

Q08747 Upstream activation factor subunit UAF302.9e-0848.08Show/hide
Query:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG
        +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Subjt:  VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.7e-1946.39Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        RT+   +A+ +A     + +GI K R VS ++ +  G  E++R  ALK +W ++K HNLQ P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.9e-3265.42Show/hide
Query:  PLPNLRFARTVTFASASNQATA-SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAG
        P   LR  R VT A+ S++ TA ++R PRGIMKPR VSPEMQ +V  PEI+RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF G+D VGFLEIA 
Subjt:  PLPNLRFARTVTFASASNQATA-SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAG

Query:  LISPHFL
        LI PHFL
Subjt:  LISPHFL

AT2G35605.1 SWIB/MDM2 domain superfamily protein8.3e-1948.45Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        R +   +AS+    + RQ  GI+K   VS  +   +G  E+SRT A+K IW +IK +NLQ P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.2e-2041.67Show/hide
Query:  LSSLPAMTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHI
        +SS+ AM F        P+     +  +A S K P   P      A+    A + + A  + R   GI K   VSP +   +G  E SRT A+K IW +I
Subjt:  LSSLPAMTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHI

Query:  KEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        K H+LQ P+DK+ I CDE LK IF GKD+VGFLEI+ L+SPHF+
Subjt:  KEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

AT4G34290.1 SWIB/MDM2 domain superfamily protein3.2e-3155.97Show/hide
Query:  SLLVAKAFPTASSVKHPCQLPL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSD
        + L     P  SS+  P  L L      NLR  R VT A+A++     T   R+PRGIMKPR VS  MQ +VG PEI RTQALK IWA+IKEH+LQ P +
Subjt:  SLLVAKAFPTASSVKHPCQLPL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSD

Query:  KKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        K+ I+CDEKLK IF GK+ VGFLEIA LI PHFL
Subjt:  KKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATTAAATTCGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATGACTTT
CGTCTCCACCTTCATCTCCGGCGAACCGTCCCTCCTTGTCGCCAAAGCCTTCCCCACCGCCTCCTCCGTCAAGCACCCCTGTCAACTCCCTCTGCCTAATTTGCGCTTCG
CCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGCAGAGTTTCGCCGGAGATGCAGGCGCTTGTC
GGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGCGACGAGAA
GCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTATTAAATTCGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATGACTTT
CGTCTCCACCTTCATCTCCGGCGAACCGTCCCTCCTTGTCGCCAAAGCCTTCCCCACCGCCTCCTCCGTCAAGCACCCCTGTCAACTCCCTCTGCCTAATTTGCGCTTCG
CCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGCAGAGTTTCGCCGGAGATGCAGGCGCTTGTC
GGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGCGACGAGAA
GCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAACGATTTGAAGAATGGAAGATAGGCATCTGGG
ACCTTCAGTTCAGTCCATGAAGATGAACTTTCTTTGTTTTTTGTTGTGGGACTCTCTCAACTCAGGTATTGCTCACTGAATCCTGTAGTTCAGAGCCCAATTTATGTTTA
GTAGTTGGATAGAGAGAAAGAAGGCTTTGTAAGAACTTTGTTTGGAGGTTTATGTAGGGATTGTTATATGGAAATCTTTGGCTAGTAGTTATTAGTTTTTGGGTAAAATG
TCTCACTTTTGTATTCGACATGCTTGATTTTTGTGCTTCTATTTGCCCTGGCCTTGATGATTTTAGTTGTTGTTAATGAAATTGTATGATTTCAACACTATCCATAAAGC
TACTTCGTCTTTTTG
Protein sequenceShow/hide protein sequence
MVLNSSFSSYRSYRFTFALSIFRTQKHNLSSLPAMTFVSTFISGEPSLLVAKAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALV
GAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL