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Clc02G07203 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07203
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S29
Genome locationClcChr02:7298545..7300296
RNA-Seq ExpressionClc02G07203
SyntenyClc02G07203
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EAZ20624.1 hypothetical protein OsJ_36239 [Oryza sativa Japonica Group]4.1e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  C+                  +PG+R+ SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

KHN30432.1 hypothetical protein glysoja_033170 [Glycine soja]3.6e-1463.49Show/hide
Query:  MGHSNVWNSHPKNYGPGSRT--CCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV
        MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+HQV
Subjt:  MGHSNVWNSHPKNYGPGSRT--CCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV

VFQ81205.1 unnamed protein product [Cuscuta campestris]1.9e-0753.12Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC-CNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPL
        MGHSN+WN+HPKNYGPGSR C   G+    +RK   +  +        V PQQ QG+WIHQVPL
Subjt:  MGHSNVWNSHPKNYGPGSRTC-CNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPL

XP_037477571.1 uncharacterized protein LOC119354910 isoform X2 [Triticum dicoccoides]2.8e-0655.56Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQ
        +GHSNVWNSHPKNYG GS  C        L + +W D +VR  VLQ V PQQR+
Subjt:  MGHSNVWNSHPKNYGPGSRTCCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQ

XP_037477572.1 uncharacterized protein LOC119354910 isoform X3 [Triticum dicoccoides]2.8e-0655.56Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTCCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQ
        +GHSNVWNSHPKNYG GS  C        L + +W D +VR  VLQ V PQQR+
Subjt:  MGHSNVWNSHPKNYGPGSRTCCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQ

TrEMBL top hitse value%identityAlignment
A0A0B2RF08 Uncharacterized protein1.7e-1463.49Show/hide
Query:  MGHSNVWNSHPKNYGPGSRT--CCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV
        MGHSNVWNSHPKNYGPGSRT    +  + P + +SSW+DQ++  +VLQ VLP+Q QGNW+HQV
Subjt:  MGHSNVWNSHPKNYGPGSRT--CCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQV

A0A0E0JAX2 Uncharacterized protein3.4e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  C+                  +PG+R+ SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

A0A0E0RHR1 Uncharacterized protein2.0e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  C+                  +PG+R+ SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

A0A4D9BYH1 Small subunit ribosomal protein S29e6.8e-1969.12Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC----CNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLN
        MGHSN+WNSHPKNYGPGSRTC     +    P +RKSSW +QKV  +VLQTVLPQQ +GNW+HQVPLN
Subjt:  MGHSNVWNSHPKNYGPGSRTC----CNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLN

A3CHR1 Uncharacterized protein2.0e-1856.82Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP
        MGHSNVWNSHPKNYGPGSR C  C+                  +PG+R+ SW DQ+VR HVLQTVLPQQRQG+ +HQVPL    F  P
Subjt:  MGHSNVWNSHPKNYGPGSRTC--CNGDE---------------TPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSP

SwissProt top hitse value%identityAlignment
Q5I7K3 40S ribosomal protein S294.1e-0590.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPKNYG GSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

Q680P8 40S ribosomal protein S293.2e-0590.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein2.3e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

AT3G44010.1 Ribosomal protein S14p/S29e family protein2.3e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC

AT4G33865.1 Ribosomal protein S14p/S29e family protein2.3e-0690.48Show/hide
Query:  MGHSNVWNSHPKNYGPGSRTC
        MGHSNVWNSHPK YGPGSR C
Subjt:  MGHSNVWNSHPKNYGPGSRTC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGTAATGGTGATGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGA
TCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCATCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAG
AAGAATATGTAATGGATGGATTATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATTATTTCCGTACACGCTAGGGTTTTGTCTCAGCACTCCACTATAAATACCTACTTTTTCTTCTAGTTGGTTCTTCAGAAAGCATTTGCCTCTTCCAAGGATTTTCGAAG
CCCTAACGAGCTCATCAGATTTCCTTCTCGCAAGAAATCCAAACATGGGGCACTCGAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGCTCTCGCACCTGTTGT
AATGGTGATGAAACGCCGGGTTTGCGGAAATCCTCATGGGTTGATCAGAAAGTACGGACTCATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGGAAATTGGATTCA
TCAAGTACCGCTAAATGGCCAAATTTTTGTCTCTCCCATTAGAGAAGAATATGTAATGGATGGATTATGGTAGCAGGAACCTTCAACTTCCATTTTATGTCCCTAGTTCA
CTTTTTCCTTGAACCTTGAGTTGATTGTTGAACTTTAGGCTACTTCAATGTTTACTAATTTTGAAGATTTAAGTTAATGTTGTTCATTTGGTAGCTCGCTCTTAATTTTT
TACCCCCTTTTCCTTAATTCTTTATCAGATGGTAACATCTCCTTATTTGATGTGTGGATTAAAGTATAGATTAAGTTAACCATCATGCTTATGCTTTGGCCGACG
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKNYGPGSRTCCNGDETPGLRKSSWVDQKVRTHVLQTVLPQQRQGNWIHQVPLNGQIFVSPIREEYVMDGLW