CuGenDBv2

Gene ID	Clc02G07295
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S2, chloroplastic
Genome location	ClcChr02:7473747..7475657
RNA-Seq Expression	Clc02G07295
Synteny	Clc02G07295
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BBN69347.1 hypothetical protein Prudu_897S000100 [Prunus dulcis]

5.4e-21

80.3

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK  CDL+FDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_009236269.1 ribosomal protein S2 [Gynostemma pentaphyllum]

4.6e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_009562976.1 30S ribosomal protein S2 [Huodendron biaristatum]

3.5e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEARV  GHGTRKWNPRM  YISAK                   CDLLFDAAS+GKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_009752739.1 ribosomal protein S2 [Cyclantheropsis parviflora]

3.5e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

YP_010119723.1 ribosomal protein S2 [Hemsleya zhejiangensis]

4.6e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

TrEMBL top hits

e value

%identity

Alignment

A0A481P613 30S ribosomal protein S2, chloroplastic

1.7e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEARV  GHGTRKWNPRM  YISAK                   CDLLFDAAS+GKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A5H2XMN2 Uncharacterized protein

2.6e-21

80.3

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK  CDL+FDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK-PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A6H0ERY3 30S ribosomal protein S2, chloroplastic

2.2e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A6H0EV20 30S ribosomal protein S2, chloroplastic

1.7e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAATRA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

A0A7S6XW76 Ribosomal protein S2

1.7e-20

66.27

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEARV  GHGTRKWNPRM  YISAK                   CDLLFDAAS+GKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

SwissProt top hits

e value

%identity

Alignment

B1A924 30S ribosomal protein S2, chloroplastic

3.0e-22

65.06

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

P08242 30S ribosomal protein S2, chloroplastic

5.1e-22

63.86

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM+ YISAK                   CDL+FDA+SRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q0ZJ31 30S ribosomal protein S2, chloroplastic

6.6e-22

63.86

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAA +A+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q49L09 30S ribosomal protein S2, chloroplastic

3.0e-22

65.06

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  DSVARAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Q4VZP4 30S ribosomal protein S2, chloroplastic

3.9e-22

63.86

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MMEA V  GHGTRKWNPRM  YISAK                   CDL+FDAA+RGKQFLIVGTKNK  DSVARAATR +CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

8.9e-22

61.45

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Query:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY
        MM A V  GHGTRKWNPRM  YISAK                   CDL+FDAASRGKQFLIVGTKNK  D V+RAA RA+CHY
Subjt:  MMEARVRLGHGTRKWNPRMTSYISAK------------------PCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHY

Sequences

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CDS sequence

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ATGATGGAAGCAAGAGTTCGTCTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGACATCTTATATCTCTGCAAAACCTTGTGATTTACTTTTTGATGCAGCAAGTAG
GGGCAAACAATTCTTAATTGTTGGTACAAAAAATAAAGTAGTGGATTCAGTAGCTCGTGCTGCAACAAGGGCTCAGTGTCATTATAACTACGATACGAGACGGGTCCTTG
TTGGCTCAGATGCACCAATAACTACTGCCTACTGGAAAAGATTACCTATTAGACGACTGTCGGTACCACTTACCTTAACCATTCAGTCATGGATGCTTAGCGAGGATCTT
CGTACTTGA

mRNA sequence

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Protein sequence

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MMEARVRLGHGTRKWNPRMTSYISAKPCDLLFDAASRGKQFLIVGTKNKVVDSVARAATRAQCHYNYDTRRVLVGSDAPITTAYWKRLPIRRLSVPLTLTIQSWMLSEDL
RT

Clc02G07295 (gene) of Watermelon (cordophanus) v2 genome