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Clc02G07445 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07445
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTubulin alpha-1B chain
Genome locationClcChr02:7764776..7766681
RNA-Seq ExpressionClc02G07445
SyntenyClc02G07445
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD2221797.1 hypothetical protein, conserved [Angomonas deanei]1.7e-2950.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++I+++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELF+VGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL

EPY32002.1 hypothetical protein STCU_03026 [Strigomonas culicis]1.6e-2750.77Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL   GRVG+H H  LHLG+V A +    LVV+A LE  G P+ ELD ALG DG + G+DVL ++I+++H+ A HVL +AG+ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDS
        VGDLR+ +L +V LL  D   + G+HEVD+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDS

EPY42742.1 hypothetical protein AGDE_01181 [Angomonas deanei]1.7e-2950.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++I+++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELF+VGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL

KAF3846725.1 hypothetical protein F7725_003803, partial [Dissostichus mawsoni]1.6e-2747.69Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A   L   G V  H H PLHLG+V++RNH   LVV+A LE SG P+H+LD ALGFDG +  +D+  ++I ++ + A HVL + G+A      WLE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDS
        VGD+ +R+L +VGLLC D+ G+GG+ EVD+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDS

OQS04464.1 hypothetical protein THRCLA_03304 [Thraustotheca clavata]4.9e-3250Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG NS ID+LR++I+++HQT+SHV  MA I L HH + +E A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI
        + D  +RELFMV L   +HR +  +HE+D+W+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI

TrEMBL top hitse value%identityAlignment
A0A1W0A2F7 Uncharacterized protein2.4e-3250Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG NS ID+LR++I+++HQT+SHV  MA I L HH + +E A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI
        + D  +RELFMV L   +HR +  +HE+D+W+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI

A0A4W2I559 Tubulin alpha-1B chain3.8e-3050.76Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V AR  L  +  V  H H  L+ G+V+AR H  RLVVNA LE SGAP+H+LD  LG DG N  ID+  N+I+++ Q A HV PMA +   H   WL+ +
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI
        +GDL YR+LFMVG L RD RG+ G+ EVD+ I
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI

A0A7G2CRM3 Uncharacterized protein8.4e-3050.74Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG + G+DVL ++I+++H+ A HVL +A +ALG H   LE  
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL
        VGDL   ELF+VGLL  D  G+GG+HEVD+ +  E+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL

J3LSE0 Uncharacterized protein1.4e-2957.38Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V A E L  AG VGDH H PLHLG+V A +   RLVV+A LE   AP+ ELD ALG DG +SG+ VL ++I+++H+ A HVL +A +ALGHHG WLE A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGI
        VGD    EL MVGLL RDH G+
Subjt:  VGDLRYRELFMVGLLCRDHRGI

K3X1R8 Uncharacterized protein1.7e-3050Show/hide
Query:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA
        +V AREH     RV DH H  LH  K+TA  + WRLVV+  LET  AP+HELDRALG D  N  I +L ++I+++H+T  HVL +A + LGHH  W + A
Subjt:  MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECA

Query:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI
        VGD   R+L +V LL RDH  +  +HEVD+W+
Subjt:  VGDLRYRELFMVGLLCRDHRGIGGKHEVDSWI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGT
AGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCT
CGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTC
ATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGT
AGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCT
CGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTC
ATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA
Protein sequenceShow/hide protein sequence
MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELF
MVGLLCRDHRGIGGKHEVDSWISVEL