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Clc02G07470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy1-copia retrotransposon protein
Genome locationClcChr02:7837968..7838437
RNA-Seq ExpressionClc02G07470
SyntenyClc02G07470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040554.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.8e-2850.32Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     +   DP+SS++ Y     VT+     Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TYK05597.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.8e-2850.32Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     +   DP+SS++ Y     VT+     Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.8e-2749.68Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     +   DP+SS      +  +T  + + Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]3.8e-2749.68Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     +   DP+SS      +  +T  + + Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

XP_038889290.1 uncharacterized protein LOC120079196 [Benincasa hispida]5.8e-2852.7Show/hide
Query:  LPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQ
        L D SKLEPL+ SNY               V YIL  + F+ GK+ + GK  + ID        P+SSKVTD  E  QS  +P  D  KFEKDNKT+C  
Subjt:  LPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQ

Query:  LLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        LLNH+T SLFDLFVVQ   KVI +TL+SRYG DDA  KKYV+ KWLQF
Subjt:  LLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

TrEMBL top hitse value%identityAlignment
A0A1S3BE75 uncharacterized protein LOC1034887071.8e-2749.68Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     +   DP+SS      +  +T  + + Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5A7TAR9 Ty1-copia retrotransposon protein2.8e-2850.32Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     +   DP+SS++ Y     VT+     Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5A7TMS2 Ty1-copia retrotransposon protein3.1e-2750.32Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD +NY               V+Y+LT D       T     +   DP+SS      +  +T  + + Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLFVVQK AK IW+TLKSRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5D3C1A6 Ty1-copia retrotransposon protein2.8e-2850.32Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD +NY               V+YILT D       T     +   DP+SS++ Y     VT+     Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLF++QK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

A0A5D3CM58 Ty1-copia retrotransposon protein1.8e-2749.68Show/hide
Query:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE
        MSIK S+K+LPD SKLEPLD++NY               V+Y+LT D       T     +   DP+SS      +  +T  + + Q K +  +DP+K+ 
Subjt:  MSIK-SDKVLPDPSKLEPLDKSNYHC-------------VNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFE

Query:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF
        KDNKT+   LLNHM+D +FDLFVVQK AK IW+TL+SRYG DDAG KKYVVGKWLQF
Subjt:  KDNKTICNQLLNHMTDSLFDLFVVQKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAA
AGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGT
CCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTTAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTC
CAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCAAGAGTGATAAGGTTCTTCCAGATCCATCAAAATTGGAGCCTCTGGATAAATCCAATTACCATTGTGTCAATTACATTCTCACTGCCGACAGATTTAATAA
AGGTAAGATTACTAACAAAGGTAAGTTTACTTTGGTGATTGATCCAGACAGCTCCAAAGTCACGTATCCGGATAGCTCCAAAGTTACAGATTCGTCAGAATCTGGTCAGT
CCAAATTCGAACCTACTGTAGATCCAGACAAATTTGAGAAAGATAACAAGACAATATGTAACCAATTACTTAATCATATGACAGATTCGTTATTCGATTTATTCGTGGTC
CAGAAGTTAGCAAAGGTGATATGGAACACTCTGAAATCTAGATATGGAAAAGATGATGCAGGCAATAAGAAGTATGTTGTTGGAAAATGGTTGCAATTTTAG
Protein sequenceShow/hide protein sequence
MSIKSDKVLPDPSKLEPLDKSNYHCVNYILTADRFNKGKITNKGKFTLVIDPDSSKVTYPDSSKVTDSSESGQSKFEPTVDPDKFEKDNKTICNQLLNHMTDSLFDLFVV
QKLAKVIWNTLKSRYGKDDAGNKKYVVGKWLQF