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Clc02G07655 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07655
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationClcChr02:8090311..8091277
RNA-Seq ExpressionClc02G07655
SyntenyClc02G07655
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR001280 - Photosystem I PsaA/PsaB
IPR036408 - Photosystem I PsaA/PsaB superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAC87909.1 photosystem1 subunit A, partial [Enkianthus chinensis]1.5e-1077.08Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV EL+T
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
CAC87921.1 photosystem1 subunit A, partial [Platanus racemosa]7.3e-1075Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
        MFLF  RGYWQELI+SIVW H K KVAPA QP ALS VQ RAV EL+T
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
CAD6238947.1 unnamed protein product [Miscanthus lutarioriparius]5.6e-1081.4Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELIKSIVW H KFKVAPATQP ALS +Q RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
KYP77019.1 Photosystem I P700 chlorophyll a apoprotein A1 [Cajanus cajan]3.3e-1061.9Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAK
        MFLF RRGYWQELI+SIVW H K KVAPATQP ALS VQ RAV   VT +    + S+  C +
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAK
YP_009768918.1 photosystem I P700 chlorophyll a apoprotein A1 [Arapatiella psilophylla]1.2e-0981.4Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
TrEMBL top hitse value%identityAlignment
A0A151UCK8 Photosystem I P700 chlorophyll a apoprotein A11.6e-1061.9Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAK
        MFLF RRGYWQELI+SIVW H K KVAPATQP ALS VQ RAV   VT +    + S+  C +
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAK
A0A7L8HZ04 Photosystem I P700 chlorophyll a apoprotein A16.0e-1081.4Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
H2FBJ2 Photosystem I P700 chlorophyll a apoprotein A16.0e-1081.4Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
Q8M944 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)3.5e-1075Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
        MFLF  RGYWQELI+SIVW H K KVAPA QP ALS VQ RAV EL+T
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
Q8M9S0 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)7.1e-1177.08Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV EL+T
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT
SwissProt top hitse value%identityAlignment
A4QJB5 Photosystem I P700 chlorophyll a apoprotein A18.1e-1279.07Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
A4QJJ9 Photosystem I P700 chlorophyll a apoprotein A18.1e-1279.07Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
A4QK18 Photosystem I P700 chlorophyll a apoprotein A18.1e-1279.07Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
Q3V534 Photosystem I P700 chlorophyll a apoprotein A18.1e-1279.07Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
Q70Y03 Photosystem I P700 chlorophyll a apoprotein A18.1e-1279.07Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
Arabidopsis top hitse value%identityAlignment
ATCG00340.1 Photosystem I, PsaA/PsaB protein5.7e-0546.81Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAP----ATQPLALSTVQRRAV
        MFL   RGYWQELI+++ W H++  +A       +P+ALS VQ R V
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAP----ATQPLALSTVQRRAV
ATCG00350.1 Photosystem I, PsaA/PsaB protein7.5e-1376.74Show/hide
Query:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV
        MFLF  RGYWQELI+SIVW H K KVAPATQP ALS +Q RAV
Subjt:  MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTATTCGGCAGGCGTGGTTATTGGCAAGAACTTATTAAATCCATCGTTTGGACTCATAAGAAATTCAAAGTTGCTCCTGCTACTCAACCATTAGCCTTGAGCAC
TGTCCAAAGACGTGCCGTAGAAGAGTTGGTAACCCAGTTTGACAATAAAGCACTTACATCTAGGGGGCAGTGTGCCAAGGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTATTCGGCAGGCGTGGTTATTGGCAAGAACTTATTAAATCCATCGTTTGGACTCATAAGAAATTCAAAGTTGCTCCTGCTACTCAACCATTAGCCTTGAGCAC
TGTCCAAAGACGTGCCGTAGAAGAGTTGGTAACCCAGTTTGACAATAAAGCACTTACATCTAGGGGGCAGTGTGCCAAGGAAAAATAA
Protein sequenceShow/hide protein sequence
MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAKEK