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Clc02G07825 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G07825
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II reaction center protein H
Genome locationClcChr02:8500350..8500833
RNA-Seq ExpressionClc02G07825
SyntenyClc02G07825
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0050821 - protein stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042301 - phosphate ion binding (molecular function)
InterPro domainsIPR001056 - Photosystem II reaction centre protein H
IPR036863 - Photosystem II reaction centre protein H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88837.1 photosystem II phosphoprotein [Lagenaria siceraria]1.4e-10100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
AHM88894.1 photosystem II phosphoprotein [Lagenaria siceraria]1.4e-10100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
KEH29755.1 photosystem II reaction center protein H [Medicago truncatula]1.1e-1053.85Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG--------------------EEVGHLDEDDFISLDIQSRLVS
        MATQTV+DSSRSGPRRT+VGDLLKPLNSEYGKVAPG                      + +LD D F   DI S + S
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG--------------------EEVGHLDEDDFISLDIQSRLVS
YP_009317415.1 photosystem II protein H [Coccinia grandis]1.4e-10100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
YP_009326018.1 photosystem II protein H [Citrullus lanatus]1.4e-10100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
TrEMBL top hitse value%identityAlignment
A0A072UV55 Photosystem II reaction center protein H5.3e-1153.85Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG--------------------EEVGHLDEDDFISLDIQSRLVS
        MATQTV+DSSRSGPRRT+VGDLLKPLNSEYGKVAPG                      + +LD D F   DI S + S
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG--------------------EEVGHLDEDDFISLDIQSRLVS
A0A1P8LE91 Photosystem II reaction center protein H6.9e-11100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
A0A1P8LEZ9 Photosystem II reaction center protein H6.9e-11100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
A0A2Z2CGC5 Photosystem II reaction center protein H6.9e-11100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
X2F4E0 Photosystem II reaction center protein H6.9e-11100Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
SwissProt top hitse value%identityAlignment
Q06GN1 Photosystem II reaction center protein H2.1e-1288.89Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTV+DSS+SGPRRT++GDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Q2PMQ6 Photosystem II reaction center protein H1.6e-1291.67Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTV+D+SRSGPRRT+VGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Q49KW9 Photosystem II reaction center protein H3.5e-1294.44Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTV+ SSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Q4VZI9 Photosystem II reaction center protein H5.4e-1394.44Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTVDDSS+SGPRRT+VGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Q70XX9 Photosystem II reaction center protein H4.6e-1291.67Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        M TQ+V+DSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
Arabidopsis top hitse value%identityAlignment
ATCG00710.1 photosystem II reaction center protein H4.7e-1288.89Show/hide
Query:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG
        MATQTV+DSSRSGPR T VG LLKPLNSEYGKVAPG
Subjt:  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGAGA
AGAAGTCGGTCATCTTGATGAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACACAAACCGTTGACGATAGTTCTAGATCTGGGCCAAGACGAACTATTGTAGGGGATTTATTGAAACCATTGAATTCGGAATATGGTAAAGTGGCTCCTGGAGA
AGAAGTCGGTCATCTTGATGAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGA
Protein sequenceShow/hide protein sequence
MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGEEVGHLDEDDFISLDIQSRLVSGAQNI