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Clc02G08000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibulose-bisphosphate carboxylase large chain
Genome locationClcChr02:8956194..8959118
RNA-Seq ExpressionClc02G08000
SyntenyClc02G08000
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876778.1 hypothetical protein Lal_00043708 [Lupinus albus]1.6e-15100Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

PPD70742.1 hypothetical protein GOBAR_DD32368 [Gossypium barbadense]6.2e-1595.24Show/hide
Query:  LNRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        + RLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  LNRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

QCE14667.1 Uncharacterized protein family Ycf1 [Vigna unguiculata]2.8e-1597.56Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        NR+IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

QHO28132.1 uncharacterized protein DS421_7g214040 [Arachis hypogaea]4.8e-1597.56Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        NRLIFPKSSHRREGLAPRCR FATWGCSMFQGLGCSPIKAV
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

THG11010.1 hypothetical protein TEA_028826 [Camellia sinensis var. sinensis]3.2e-1975.81Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVLSWVQNVVRQFGPYPVWALEH
        N LIFPKSSH+ EGLAPRCRLFATWGCS FQG    P K  +SWVQNV+RQF PY VWALEH
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVLSWVQNVVRQFGPYPVWALEH

TrEMBL top hitse value%identityAlignment
A0A4D6NSC2 Uncharacterized protein family Ycf11.4e-1597.56Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        NR+IFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

A0A4S4E4Y1 Uncharacterized protein1.5e-1975.81Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVLSWVQNVVRQFGPYPVWALEH
        N LIFPKSSH+ EGLAPRCRLFATWGCS FQG    P K  +SWVQNV+RQF PY VWALEH
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVLSWVQNVVRQFGPYPVWALEH

A0A5N6L135 Uncharacterized protein2.0e-14100Show/hide
Query:  LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

A0A6A5MXD5 Uncharacterized protein7.9e-16100Show/hide
Query:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  NRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

A0A6D2L2K8 Uncharacterized protein2.0e-14100Show/hide
Query:  LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
        LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV
Subjt:  LIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGGTCTTGACGTCTGGGTTTTCACTTCTTTTGTTCTCGCAGCAGCTTCTTCTCTGGTAGTGAACGGAGTTCTTCCTTTCATTCTAAACAGGTTGATCTTCCCCAA
GAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGACTCTTCGCCACTTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACTGAGCT
GGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACGGTCTTGACGTCTGGGTTTTCACTTCTTTTGTTCTCGCAGCAGCTTCTTCTCTGGTAGTGAACGGAGTTCTTCCTTTCATTCTAAACAGGTTGATCTTCCCCAA
GAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGACTCTTCGCCACTTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACTGAGCT
GGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTAA
Protein sequenceShow/hide protein sequence
MHGLDVWVFTSFVLAAASSLVVNGVLPFILNRLIFPKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVLSWVQNVVRQFGPYPVWALEH