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Clc02G08100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein 18
Genome locationClcChr02:9137855..9139840
RNA-Seq ExpressionClc02G08100
SyntenyClc02G08100
Gene Ontology termsGO:0009846 - pollen germination (biological process)
GO:0009860 - pollen tube growth (biological process)
GO:0052543 - callose deposition in cell wall (biological process)
GO:0005640 - nuclear outer membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033663.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1660.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          L  + + +  +  F   LFLL   G+
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
POO00221.1 Transmembrane protein [Trema orientale]2.3e-1684.62Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
        MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
XP_022949841.1 transmembrane protein 18 [Cucurbita moschata]1.8e-1660.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          L  + + +  +  F   LFLL   G+
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
XP_023543279.1 transmembrane protein 18 [Cucurbita pepo subsp. pepo]1.8e-1660.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          L  + + +  +  F   LFLL   G+
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
XP_038900756.1 transmembrane protein 18 [Benincasa hispida]2.3e-1690Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY
        MEELRSAMEEHMDQMADLI K+SSELRSG+RPAVDNFVGFFHAIDWKE +
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY
TrEMBL top hitse value%identityAlignment
A0A2P5E5D7 Transmembrane protein 181.1e-1684.62Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
        MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
A0A2P5FR32 Transmembrane protein 181.1e-1684.62Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
        MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL
A0A6J1DPY2 Transmembrane protein 182.5e-1653.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQLSDVLVPSCTYDLFSYLLFLLKCNGIVQVGSVRFTFYMLICTSFMYFKE
        MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNF+GFFHAI WKE + +           L  +   LL    + +  +    F  L+  + +YF E
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQLSDVLVPSCTYDLFSYLLFLLKCNGIVQVGSVRFTFYMLICTSFMYFKE

Query:  K
        +
Subjt:  K
A0A6J1GD63 Transmembrane protein 188.5e-1760.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          L  + + +  +  F   LFLL   G+
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
A0A6J1ISM9 Transmembrane protein 188.5e-1760.47Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
        MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          L  + + +  +  F   LFLL   G+
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKCNGI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34350.1 unknown protein1.0e-1468Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY
        MEE+RSAME+ +D +ADL+ KLS ELR+G +PA DNF+GFFHAIDWKE +
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY
AT1G34350.2 unknown protein1.3e-1451.81Show/hide
Query:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKC
        MEE+RSAME+ +D +ADL+ KLS ELR+G +PA DNF+GFFHAIDWKE +          L  V + S  +  F   LFLL C
Subjt:  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------QLSDVLVPSCTYDLFSYLLFLLKC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTT
CGTCGGTTTCTTCCACGCTATTGACTGGAAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAAT
GTAATGGCATTGTTCAAGTAGGAAGTGTAAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGT
CCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATCTTGTAGCTGTGTATCTTATCCTTCAACAGAGATCGATGAACTGATACGAATACAATGCGAGGA
GCGGGTTTGGTTATTCTTTTTTTTCTCTTATTTATTGACTAGAATCTCCATAGATATTATTGTGATCAACTTTATACGACATTCACTCACTTTATGTAGCTTGAATTTCA
TCAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTT
CGTCGGTTTCTTCCACGCTATTGACTGGAAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAAT
GTAATGGCATTGTTCAAGTAGGAAGTGTAAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGT
CCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATCTTGTAGCTGTGTATCTTATCCTTCAACAGAGATCGATGAACTGATACGAATACAATGCGAGGA
GCGGGTTTGGTTATTCTTTTTTTTCTCTTATTTATTGACTAGAATCTCCATAGATATTATTGTGATCAACTTTATACGACATTCACTCACTTTATGTAGCTTGAATTTCA
TCAGCGAGTAA
Protein sequenceShow/hide protein sequence
MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQLSDVLVPSCTYDLFSYLLFLLKCNGIVQVGSVRFTFYMLICTSFMYFKEKTPFFAFHRS
PFLFTFIFCKEYTFSSCSCVSYPSTEIDELIRIQCEERVWLFFFFSYLLTRISIDIIVINFIRHSLTLCSLNFISE