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Clc02G08165 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08165
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr02:9270705..9271761
RNA-Seq ExpressionClc02G08165
SyntenyClc02G08165
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48504.1 hypothetical protein EZV62_024379 [Acer yangbiense]1.1e-2945.74Show/hide
Query:  GPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGESQEK
        GPW FD  LLALE L+    +SQL+F K  FW+++ DIP+   N+ MAK +   IG  IE+ S +   CWG+ LR+K+LIDI++PL+R + +KL +S   
Subjt:  GPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGESQEK

Query:  FWIHIRYERLPDFCYGCGKIGHTVKECKE
          ++++YERLP+FCY CG++GH++ +C +
Subjt:  FWIHIRYERLPDFCYGCGKIGHTVKECKE

TXG48811.1 hypothetical protein EZV62_024686 [Acer yangbiense]1.4e-2940.71Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        + H GPW FD +L+  E L+    +SQL+F+K  FW+++ DIP+   N+ MAK + + IG+ I++ S +   CWG+ LR+K+LIDI++PL+R + +KL +
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNA
        S+    ++++YERL +FCY CG++GH++ EC +      A
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNA

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.5e-2943.48Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        +L +GPW FD +L+ ++N     K   ++F  V+ W+   D+ L   NK MA R+G+AIG F +V SN +NFCWG  LR+++  D+ KPL RGI + L  
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDS
             WI I+YERLPDF Y CG++ H +K+C +   DS
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDS

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.5e-3452.67Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        V+  GPW FD +L+ L+    +  +S+L F++VAFWI L D+P+ + NK MA R+G+AIG F++V  N+  F WG SLRI++LIDITKPLRRGI I +  
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKEC
             WI I+YERLPDFCY CG IGH+  +C
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKEC

XP_024642377.1 uncharacterized protein LOC112422874 [Medicago truncatula]1.5e-3143.24Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        +LH GPW FD +LL L+ +    + S+L+   V FW+++ D+PL  ++  MA+++GD +GKF+EV     N   G+S+RIK+ ID+  PL+RGI +K   
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSG-DSNAEVDLEKR
         +   WI  +YERLP+FCY CG+IGH +KEC+E++G D     D+E++
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSG-DSNAEVDLEKR

TrEMBL top hitse value%identityAlignment
A0A5C7GUN2 CCHC-type domain-containing protein5.4e-3045.74Show/hide
Query:  GPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGESQEK
        GPW FD  LLALE L+    +SQL+F K  FW+++ DIP+   N+ MAK +   IG  IE+ S +   CWG+ LR+K+LIDI++PL+R + +KL +S   
Subjt:  GPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGESQEK

Query:  FWIHIRYERLPDFCYGCGKIGHTVKECKE
          ++++YERLP+FCY CG++GH++ +C +
Subjt:  FWIHIRYERLPDFCYGCGKIGHTVKECKE

A0A5C7GW54 CCHC-type domain-containing protein7.0e-3040.71Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        + H GPW FD +L+  E L+    +SQL+F+K  FW+++ DIP+   N+ MAK + + IG+ I++ S +   CWG+ LR+K+LIDI++PL+R + +KL +
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNA
        S+    ++++YERL +FCY CG++GH++ EC +      A
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNA

A0A6J1BSZ1 uncharacterized protein LOC1110054811.2e-2943.48Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        +L +GPW FD +L+ ++N     K   ++F  V+ W+   D+ L   NK MA R+G+AIG F +V SN +NFCWG  LR+++  D+ KPL RGI + L  
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDS
             WI I+YERLPDF Y CG++ H +K+C +   DS
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDS

A0A6J1DU55 uncharacterized protein LOC1110231357.2e-3552.67Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        V+  GPW FD +L+ L+    +  +S+L F++VAFWI L D+P+ + NK MA R+G+AIG F++V  N+  F WG SLRI++LIDITKPLRRGI I +  
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKEC
             WI I+YERLPDFCY CG IGH+  +C
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKEC

A0A803MW53 Uncharacterized protein1.4e-3041.72Show/hide
Query:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE
        VL   PW FDN +L L+ +    + S+++FD   FWI+LLD+P G ++  +A  +G+ IG+ I+V    D  CW E +R+K++++I KPLRRG+ I + +
Subjt:  VLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGE

Query:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNAEVDLEKRSPLL
           K WI  +YERL DFCY CG+IGHT K+C+++ G S+  + + +  P L
Subjt:  SQEKFWIHIRYERLPDFCYGCGKIGHTVKECKEQSGDSNAEVDLEKRSPLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTGCATCTTGGTCCTTGGTGTTTCGATAATTCTTTACTAGCGTTGGAGAATCTGAAAGTCAATGTTAAACTATCGCAATTAAATTTTGATAAAGTAGCCTTTTG
GATCAAACTGCTGGACATTCCTCTTGGATTTCAAAACAAGTTCATGGCAAAACGAGTTGGAGATGCAATTGGAAAATTCATTGAGGTGGGCTCTAATCAAGATAATTTTT
GCTGGGGAGAGAGCCTTAGGATAAAGATCTTGATCGACATTACCAAGCCTCTGAGACGTGGAATTTGGATCAAACTAGGTGAAAGTCAAGAGAAATTCTGGATTCATATC
AGGTATGAAAGACTCCCAGATTTCTGCTATGGGTGTGGTAAAATTGGTCACACAGTCAAAGAATGCAAAGAGCAATCAGGGGATTCTAATGCTGAAGTTGACCTGGAGAA
GAGGTCCCCTCTCCTTTGGAAGGTAACAATAGTAAGTCTTCTGCCCCCATTGGATTCTTTCCCATTGGATTTGAATCATGGCCCCGTAGAGGATAAGGGAAGACTTCTTA
AGAAGAAACAGAGGACATGGAAAAGAAGAGCTAGATTGGAAAGTAAGGAAGAGAACCAGAGGATGGGATCTCTTTCTTTAATGAAGAGGCCAGGGGATGAATTAACAAAT
CTATTGGTTCCCAAAAGGAAAAGGGAAAATTCTCTTCCCATTATCACCGATTCTAACAATATGGTTAAGGCGGGGCTGTTGAATCAGCTCTGCCCTGAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTGCATCTTGGTCCTTGGTGTTTCGATAATTCTTTACTAGCGTTGGAGAATCTGAAAGTCAATGTTAAACTATCGCAATTAAATTTTGATAAAGTAGCCTTTTG
GATCAAACTGCTGGACATTCCTCTTGGATTTCAAAACAAGTTCATGGCAAAACGAGTTGGAGATGCAATTGGAAAATTCATTGAGGTGGGCTCTAATCAAGATAATTTTT
GCTGGGGAGAGAGCCTTAGGATAAAGATCTTGATCGACATTACCAAGCCTCTGAGACGTGGAATTTGGATCAAACTAGGTGAAAGTCAAGAGAAATTCTGGATTCATATC
AGGTATGAAAGACTCCCAGATTTCTGCTATGGGTGTGGTAAAATTGGTCACACAGTCAAAGAATGCAAAGAGCAATCAGGGGATTCTAATGCTGAAGTTGACCTGGAGAA
GAGGTCCCCTCTCCTTTGGAAGGTAACAATAGTAAGTCTTCTGCCCCCATTGGATTCTTTCCCATTGGATTTGAATCATGGCCCCGTAGAGGATAAGGGAAGACTTCTTA
AGAAGAAACAGAGGACATGGAAAAGAAGAGCTAGATTGGAAAGTAAGGAAGAGAACCAGAGGATGGGATCTCTTTCTTTAATGAAGAGGCCAGGGGATGAATTAACAAAT
CTATTGGTTCCCAAAAGGAAAAGGGAAAATTCTCTTCCCATTATCACCGATTCTAACAATATGGTTAAGGCGGGGCTGTTGAATCAGCTCTGCCCTGAACCATGA
Protein sequenceShow/hide protein sequence
MVLHLGPWCFDNSLLALENLKVNVKLSQLNFDKVAFWIKLLDIPLGFQNKFMAKRVGDAIGKFIEVGSNQDNFCWGESLRIKILIDITKPLRRGIWIKLGESQEKFWIHI
RYERLPDFCYGCGKIGHTVKECKEQSGDSNAEVDLEKRSPLLWKVTIVSLLPPLDSFPLDLNHGPVEDKGRLLKKKQRTWKRRARLESKEENQRMGSLSLMKRPGDELTN
LLVPKRKRENSLPIITDSNNMVKAGLLNQLCPEP