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Clc02G08420 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08420
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr02:9857923..9859198
RNA-Seq ExpressionClc02G08420
SyntenyClc02G08420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]1.1e-1250Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK
        V Q E+KFTE SRFA DL+    RKI+RF+RGL + I+G + L+ PTT+A AI  AL+MDK+  +K Q    + +   S G KRK PP  S Q SK
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK
XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.1e-1245.13Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRFA +L+     KI+RF++GL + IRG V L+ P T+A A+  ALIMDK+ + + Q      E  +S G KRK  PA +DQ  +A + 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
         + Q    P+C S
Subjt:  TSGQATTLPLCGS
XP_022155925.1 uncharacterized protein LOC111022925 [Momordica charantia]1.4e-1246.02Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRF    +   + KI +FI GL  EI+G + LKEPTT+AAA+  AL+MDK   ++PQ   S+    +S G KRK     S Q S+ H+ 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
           + TT P C S
Subjt:  TSGQATTLPLCGS
XP_022156794.1 uncharacterized protein LOC111023627 [Momordica charantia]8.2e-1349.48Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA
        V Q E+KFTELS FA DL+   E+KI+RF++GL + IRG V L+ PTT+A AI   L+MDK+ T K Q  H   E  +S G KRK+P    +Q  +A
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA
XP_022156992.1 uncharacterized protein LOC111023821 [Momordica charantia]8.2e-1346.02Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRF    + + + KI +FI GLH EI+G + LKEPTT+AAA+  AL+MDK   ++PQ   S+    +S G KRK     S Q S+ H+ 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
           + T  P+C S
Subjt:  TSGQATTLPLCGS
TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196035.2e-1350Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK
        V Q E+KFTE SRFA DL+    RKI+RF+RGL + I+G + L+ PTT+A AI  AL+MDK+  +K Q    + +   S G KRK PP  S Q SK
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK
A0A6J1DNV8 uncharacterized protein LOC1110229256.7e-1346.02Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRF    +   + KI +FI GL  EI+G + LKEPTT+AAA+  AL+MDK   ++PQ   S+    +S G KRK     S Q S+ H+ 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
           + TT P C S
Subjt:  TSGQATTLPLCGS
A0A6J1DQJ4 uncharacterized protein LOC1110228855.2e-1345.13Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRFA +L+     KI+RF++GL + IRG V L+ P T+A A+  ALIMDK+ + + Q      E  +S G KRK  PA +DQ  +A + 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
         + Q    P+C S
Subjt:  TSGQATTLPLCGS
A0A6J1DTE5 uncharacterized protein LOC1110238214.0e-1346.02Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP
        V Q ERKFTELSRF    + + + KI +FI GLH EI+G + LKEPTT+AAA+  AL+MDK   ++PQ   S+    +S G KRK     S Q S+ H+ 
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRP

Query:  TSGQATTLPLCGS
           + T  P+C S
Subjt:  TSGQATTLPLCGS
A0A6J1DUN2 uncharacterized protein LOC1110236274.0e-1349.48Show/hide
Query:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA
        V Q E+KFTELS FA DL+   E+KI+RF++GL + IRG V L+ PTT+A AI   L+MDK+ T K Q  H   E  +S G KRK+P    +Q  +A
Subjt:  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCTTATGTGCAACTTGCGGTAGTTGTAACTTGGTATCAGAGAGTGATCCAGTGTGAAAGGAAGTTTACCGAGTTGTCTCGTTTTGCACCCGACCTGGTGAGTAT
GTTAGAGAGGAAGATTCAAAGGTTCATCAGGGGCCTACATGAGGAAATCAGAGGTGCGGTCGCCTTAAAGGAGCCAACGACCTTTGCGGCAGCGATTGGGGCCGCCCTGA
TCATGGACAAAAACACGACCAAGAAACCTCAAGCGACACACTCACGTTGGGAGGCCAGCACCTCATTTGGATTTAAAAGGAAGTCTCCCCCAGCCCCGTCAGATCAAACT
TCCAAGGCCCACCGTCCAACCTCGGGACAAGCTACCACCCTCCCATTGTGCGGCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCTTATGTGCAACTTGCGGTAGTTGTAACTTGGTATCAGAGAGTGATCCAGTGTGAAAGGAAGTTTACCGAGTTGTCTCGTTTTGCACCCGACCTGGTGAGTAT
GTTAGAGAGGAAGATTCAAAGGTTCATCAGGGGCCTACATGAGGAAATCAGAGGTGCGGTCGCCTTAAAGGAGCCAACGACCTTTGCGGCAGCGATTGGGGCCGCCCTGA
TCATGGACAAAAACACGACCAAGAAACCTCAAGCGACACACTCACGTTGGGAGGCCAGCACCTCATTTGGATTTAAAAGGAAGTCTCCCCCAGCCCCGTCAGATCAAACT
TCCAAGGCCCACCGTCCAACCTCGGGACAAGCTACCACCCTCCCATTGTGCGGCTCATGA
Protein sequenceShow/hide protein sequence
MWSYVQLAVVVTWYQRVIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQT
SKAHRPTSGQATTLPLCGS