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Clc02G08710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr02:10509945..10515008
RNA-Seq ExpressionClc02G08710
SyntenyClc02G08710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1343.75Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ--------CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC+V  V  G WR++N TFR  +L  + RMM + +P+ +IQ         HP+AK L HKSFP+YDD + VF  D A G+ + T A+ G
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ--------CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

KAA0045644.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1547.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC++  V  G W+++N TFRP +L  ++RMM +N+P C  Q HP+AK L +KSFP+YD+ T VF +DR     A T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

KAA0062548.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-1547.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        KE+  LVEC++  V  G W+++N TFRP ++  ++RMM + +P C  Q HP+AK L +K FP+YD+ T VF +DRA G  A T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

KAA0064269.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1547.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC++  V  G W+++N TFRP +L  ++RMM + +PEC  Q HP+AK L +K FP+YD+ T VF +DRA G    T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

TYK19767.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-1548.89Show/hide
Query:  DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +KE+  LVEC+V+ V    WR++N TFR  +L  V RMM + +  C+IQ  HP+AK L +K+FP+YDD T VF KDR +  R+ T A VG
Subjt:  DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

TrEMBL top hitse value%identityAlignment
A0A5A7TRH0 Retrotransposon protein7.4e-1647.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC++  V  G W+++N TFRP +L  ++RMM +N+P C  Q HP+AK L +KSFP+YD+ T VF +DR     A T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

A0A5A7UPF7 Retrotransposon protein5.3e-1444.32Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC++  V    W++NN TFRPS+L  ++RMM + +P C  Q HP+AK L  KSFP+YD+ T VF +++A+   A T  ++G
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

A0A5A7V4P8 Retrotransposon protein5.6e-1647.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        KE+  LVEC++  V  G W+++N TFRP ++  ++RMM + +P C  Q HP+AK L +K FP+YD+ T VF +DRA G  A T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

A0A5A7VFF9 Retrotransposon protein7.4e-1647.73Show/hide
Query:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +E+  LVEC++  V  G W+++N TFRP +L  ++RMM + +PEC  Q HP+AK L +K FP+YD+ T VF +DRA G    T A+VG
Subjt:  KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

A0A5D3D879 Retrotransposon protein1.6e-1548.89Show/hide
Query:  DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG
        +KE+  LVEC+V+ V    WR++N TFR  +L  V RMM + +  C+IQ  HP+AK L +K+FP+YDD T VF KDR +  R+ T A VG
Subjt:  DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGAGGACATAATTCTGGTAGAGTGTATGGTACGATATGTGCAGTTTGGACATTGGCGAGCTAACAACGACACATTTCGACCTAGTTTTTTGGTGAATGTGTT
GAGGATGATGCAACAAAATATTCCAGAGTGTTCCATACAGTGTCATCCAAGTGCCAAAGAACTTAGGCATAAGTCATTTCCATTCTATGATGACCCGACGATTGTCTTTA
GCAAAGACAGAGCAATAGGGAGTCGTGCCACTACCATTGCTGAGGTTGGCCTGTGGGGGTCGCTAGAGGTGGTAGTTAAAGGTTGGACAGCGGGGGAAGGGGGAGGAGTC
GCTGGAGGTTGGCTGGCGACAATCATCGGAGGTGGCTACCTGAGTTGGCCAGCGACGGTTGGAGTTTGTTGCCGACTGTTACTGGAGGTCATCAAACCTCTCTCCATTTT
CGTTCTGAAACTCCAAGGTTCCTTGAATCGGCCTTTTTCATTCACTCACCACCGTTGTATCCTCATCGCTGCCAATTCCTTGTGTTGCCGTTTTCGTTCACGTTGCCGCC
TCTGTTTCCTCGCTAGTGCAACGCAGCTGCGCTCCAAGGGAATGTTGCTGGGTTCTCACCAATTTTCCTCTCGAGTCTCCAGCATAAAGCTAAGCGTAATGCTTAGTGAA
GTTGCACTTTCCAGGGGCATTTTCGTCCTTTTCCACGTCCTTGAGCTCCTAGTGTCCAATTTCACTTCCGATAGCTCCAATCAACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGAGGACATAATTCTGGTAGAGTGTATGGTACGATATGTGCAGTTTGGACATTGGCGAGCTAACAACGACACATTTCGACCTAGTTTTTTGGTGAATGTGTT
GAGGATGATGCAACAAAATATTCCAGAGTGTTCCATACAGTGTCATCCAAGTGCCAAAGAACTTAGGCATAAGTCATTTCCATTCTATGATGACCCGACGATTGTCTTTA
GCAAAGACAGAGCAATAGGGAGTCGTGCCACTACCATTGCTGAGGTTGGCCTGTGGGGGTCGCTAGAGGTGGTAGTTAAAGGTTGGACAGCGGGGGAAGGGGGAGGAGTC
GCTGGAGGTTGGCTGGCGACAATCATCGGAGGTGGCTACCTGAGTTGGCCAGCGACGGTTGGAGTTTGTTGCCGACTGTTACTGGAGGTCATCAAACCTCTCTCCATTTT
CGTTCTGAAACTCCAAGGTTCCTTGAATCGGCCTTTTTCATTCACTCACCACCGTTGTATCCTCATCGCTGCCAATTCCTTGTGTTGCCGTTTTCGTTCACGTTGCCGCC
TCTGTTTCCTCGCTAGTGCAACGCAGCTGCGCTCCAAGGGAATGTTGCTGGGTTCTCACCAATTTTCCTCTCGAGTCTCCAGCATAAAGCTAAGCGTAATGCTTAGTGAA
GTTGCACTTTCCAGGGGCATTTTCGTCCTTTTCCACGTCCTTGAGCTCCTAGTGTCCAATTTCACTTCCGATAGCTCCAATCAACCCTGA
Protein sequenceShow/hide protein sequence
MDKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVGLWGSLEVVVKGWTAGEGGGV
AGGWLATIIGGGYLSWPATVGVCCRLLLEVIKPLSIFVLKLQGSLNRPFSFTHHRCILIAANSLCCRFRSRCRLCFLASATQLRSKGMLLGSHQFSSRVSSIKLSVMLSE
VALSRGIFVLFHVLELLVSNFTSDSSNQP