; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G08870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G08870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSodium Bile acid symporter family
Genome locationClcChr02:11160946..11163406
RNA-Seq ExpressionClc02G08870
SyntenyClc02G08870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016833 - Putative sodium bile acid cotransporter
IPR038770 - Sodium/solute symporter superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040654.1 putative sodium/metabolite cotransporter BASS4 [Cucumis melo var. makuwa]4.0e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

XP_004151888.1 probable sodium/metabolite cotransporter BASS4, chloroplastic [Cucumis sativus]9.5e-7782.05Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL+SLLV SH SNPPAF FQIS FSSN ALL ++SLALNRKR+ Y PIRA GLPDK KDDGGRINEP  VSGSE RV+WF+ LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVGVANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHLQPQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

XP_008455871.1 PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X1 [Cucumis melo]4.0e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

XP_008455872.1 PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X2 [Cucumis melo]4.0e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

XP_038900991.1 probable sodium/metabolite cotransporter BASS4, chloroplastic [Benincasa hispida]1.4e-8387.69Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MALVGTKSLHSLLVSSH SNPPAFC QISR+SSNGA L +SSLALNRKRQIYSPIRA GLPDK KDDGGRINEPA VSGSENRV WF+ALSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVGVANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGLASILLLTPYFSRLIL IHLQPQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

TrEMBL top hitse value%identityAlignment
A0A0A0LN64 Uncharacterized protein4.6e-7782.05Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL+SLLV SH SNPPAF FQIS FSSN ALL ++SLALNRKR+ Y PIRA GLPDK KDDGGRINEP  VSGSE RV+WF+ LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVGVANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHLQPQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

A0A1S3C1I1 probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X21.9e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

A0A1S3C366 probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X11.9e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

A0A5A7TB17 Putative sodium/metabolite cotransporter BASS41.9e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

A0A5D3DKR1 Putative sodium/metabolite cotransporter BASS41.9e-7581.54Show/hide
Query:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP
        MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GLPDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLP
Subjt:  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLP

Query:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        L      +LVTGVAVG+ANPSLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLIL IHL PQEFVT L+
Subjt:  LGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

SwissProt top hitse value%identityAlignment
B8AJ09 Probable sodium/metabolite cotransporter BASS4, chloroplastic6.1e-2645.7Show/hide
Query:  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSG
        L R R + +   A+G       DG +   PA  S S        AL  FA +NFLPL      +L+ G+A+ + +P+LGCLA +Y LSK STFGIF++SG
Subjt:  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSG

Query:  LTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        LTLRT E+ A+LEAWP  ++GLASILL TP+ ++ I+ I   P EF+T L+
Subjt:  LTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

F4IZC4 Probable sodium/metabolite cotransporter BASS4, chloroplastic2.0e-2956.3Show/hide
Query:  GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPY
        G+S S  R+ + K L +FA++NFLPL      +LV+GV +G ANP+LGCLAD+Y  +K+ST GIF++SGLTLRT  I A+++ WP+ ++GL SILLLTP 
Subjt:  GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPY

Query:  FSRLILLIHLQPQEFVTVL
        FSRLI+L+ LQP+E VT L
Subjt:  FSRLILLIHLQPQEFVTVL

Q6ESG1 Probable sodium/metabolite cotransporter BASS4, chloroplastic6.1e-2645.7Show/hide
Query:  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSG
        L R R + +   A+G       DG +   PA  S S        AL  FA +NFLPL      +L+ G+A+ + +P+LGCLA +Y LSK STFGIF++SG
Subjt:  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSG

Query:  LTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS
        LTLRT E+ A+LEAWP  ++GLASILL TP+ ++ I+ I   P EF+T L+
Subjt:  LTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLS

Arabidopsis top hitse value%identityAlignment
AT3G56160.1 Sodium Bile acid symporter family1.4e-3056.3Show/hide
Query:  GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPY
        G+S S  R+ + K L +FA++NFLPL      +LV+GV +G ANP+LGCLAD+Y  +K+ST GIF++SGLTLRT  I A+++ WP+ ++GL SILLLTP 
Subjt:  GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPY

Query:  FSRLILLIHLQPQEFVTVL
        FSRLI+L+ LQP+E VT L
Subjt:  FSRLILLIHLQPQEFVTVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTATTGTCTATTATTTTTCTCCCTTCACCCTCTTCACATCAATTTGTATTTAATTTTAGGTTGGTTTGAAAGTTTGATGGACTTTCCTATGGCGTTGGTGGGAAC
CAAATCCCTACACAGTCTTCTCGTTTCATCTCATTGGAGCAATCCACCGGCCTTTTGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGCACTCTTGCGTACCAGTTCTC
TCGCTTTGAATCGTAAACGCCAAATTTATAGTCCCATCAGAGCCTCCGGATTGCCCGATAAGGTTAAAGACGATGGTGGAAGGATAAACGAACCTGCCGGTGTTTCGGGT
TCGGAAAATAGGGTTAATTGGTTCAAGGCATTATCGACTTTTGCAAATAATAATTTTCTTCCTCTAGGTAAGTTAAAGACTTATTCTCTTGTCACTGGTGTAGCAGTAGG
AGTTGCGAATCCAAGTCTTGGATGTCTTGCTGATAGGTATTATCTCTCAAAGTTAAGCACATTCGGTATATTTGTCGTCTCAGGGTTGACATTGCGTACTTCAGAAATTA
GTGCTTCATTGGAGGCATGGCCTGTTGCAGTTTATGGGCTTGCTTCAATTCTTTTGCTTACTCCATACTTTTCCAGGCTGATATTGCTAATTCATCTTCAACCTCAAGAA
TTTGTAACAGTTTTATCAAGAGTTTGGTCTAATAAAGATTGGTCAGTGGCCATATTTACTTTACTTAGTGCTCCAGTTAGCCTTAAGGCCCTTAACATTCAATTGACCGT
TTGTATGGATAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTATTGTCTATTATTTTTCTCCCTTCACCCTCTTCACATCAATTTGTATTTAATTTTAGGTTGGTTTGAAAGTTTGATGGACTTTCCTATGGCGTTGGTGGGAAC
CAAATCCCTACACAGTCTTCTCGTTTCATCTCATTGGAGCAATCCACCGGCCTTTTGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGCACTCTTGCGTACCAGTTCTC
TCGCTTTGAATCGTAAACGCCAAATTTATAGTCCCATCAGAGCCTCCGGATTGCCCGATAAGGTTAAAGACGATGGTGGAAGGATAAACGAACCTGCCGGTGTTTCGGGT
TCGGAAAATAGGGTTAATTGGTTCAAGGCATTATCGACTTTTGCAAATAATAATTTTCTTCCTCTAGGTAAGTTAAAGACTTATTCTCTTGTCACTGGTGTAGCAGTAGG
AGTTGCGAATCCAAGTCTTGGATGTCTTGCTGATAGGTATTATCTCTCAAAGTTAAGCACATTCGGTATATTTGTCGTCTCAGGGTTGACATTGCGTACTTCAGAAATTA
GTGCTTCATTGGAGGCATGGCCTGTTGCAGTTTATGGGCTTGCTTCAATTCTTTTGCTTACTCCATACTTTTCCAGGCTGATATTGCTAATTCATCTTCAACCTCAAGAA
TTTGTAACAGTTTTATCAAGAGTTTGGTCTAATAAAGATTGGTCAGTGGCCATATTTACTTTACTTAGTGCTCCAGTTAGCCTTAAGGCCCTTAACATTCAATTGACCGT
TTGTATGGATAATTGA
Protein sequenceShow/hide protein sequence
MCYCLLFFSLHPLHINLYLILGWFESLMDFPMALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSG
SENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQE
FVTVLSRVWSNKDWSVAIFTLLSAPVSLKALNIQLTVCMDN