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Clc02G09210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal_L30 domain-containing protein
Genome locationClcChr02:11969818..11972793
RNA-Seq ExpressionClc02G09210
SyntenyClc02G09210
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5093.64Show/hide
Query:  ILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPL
        ILE+LDMNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPL
Subjt:  ILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPL

Query:  VVNHLPAPKS
        VVNHLPAP S
Subjt:  VVNHLPAPKS

KAG7010749.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma]2.8e-4894.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        +P SA AS
Subjt:  APKSAPAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]2.2e-4894.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        +P SA AS
Subjt:  APKSAPAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]4.3e-4996.3Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        AP SA AS
Subjt:  APKSAPAS

XP_038901296.1 50S ribosomal protein L30 [Benincasa hispida]4.8e-4895.37Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPP+VV+HLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        AP S  AS
Subjt:  APKSAPAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein1.2e-4791.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        AP SA AS
Subjt:  APKSAPAS

A0A1S3C214 50S ribosomal protein L303.0e-4891.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        AP SA AS
Subjt:  APKSAPAS

A0A5A7VAZ6 50S ribosomal protein L303.0e-4891.67Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        AP SA AS
Subjt:  APKSAPAS

A0A6J1CI25 uncharacterized protein LOC1110111348.8e-4893.46Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPA
         P S  A
Subjt:  APKSAPA

A0A6J1FUA4 uncharacterized protein LOC1114488481.0e-4894.44Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
        +P SA AS
Subjt:  APKSAPAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L304.4e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

A8ZV75 50S ribosomal protein L304.4e-0443.86Show/hide
Query:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Subjt:  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

C3PL27 50S ribosomal protein L305.8e-0440.74Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Q8FS51 50S ribosomal protein L302.6e-0450Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Q8NSX3 50S ribosomal protein L302.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein2.1e-3364.81Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGM+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H  
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  APKSAPAS
           S+PA+
Subjt:  APKSAPAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACC
CACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTA
ACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAG
ATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCT
GAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGC
CACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATG
CCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACA
GGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGG
CTCCAAAGTCTGCTCCTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACC
CACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTA
ACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAG
ATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCT
GAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGC
CACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATG
CCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACA
GGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGG
CTCCAAAGTCTGCTCCTGCCTCTTGA
Protein sequenceShow/hide protein sequence
MLRILLSEEFEMEAGYGEGEIVQSFRLLNWLDAWSQPTRLDAWSQRIGSTHGFPLVLATASSLRTSIVCASFLNPASPCRGLVLWPISLPRAIFALPAKDARDLLAPCQK
MHYIYLPRCPSPSGEEKRHWLRLQRKPLLIILLFIRLSNSIFRAYAVSPPTVSLVADHASISPSTISPRFALSPPPPILEILDMNAFKAFKANVPIAWSPNLYITLVRGM
PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS