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Clc02G09230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRPM1-interacting protein 4-like
Genome locationClcChr02:12043726..12045091
RNA-Seq ExpressionClc02G09230
SyntenyClc02G09230
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646808.1 hypothetical protein Csa_005404 [Cucumis sativus]8.6e-2772.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPLEFAEKMV-LLLASCRIV---KLSRFDKW
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGKSQP+    +M+ + L S  I    KL   D W
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPLEFAEKMV-LLLASCRIV---KLSRFDKW

KAG6570949.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2696.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

KAG7010787.1 hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2768.63Show/hide
Query:  CMVDSMECIALRL----EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPLEFAEKMVLLLASCRIVKLS
        C+  ++    +RL    EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP+   +  V  L S R+V  +
Subjt:  CMVDSMECIALRL----EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPLEFAEKMVLLLASCRIVKLS

Query:  RF
         F
Subjt:  RF

XP_022943908.1 RPM1-interacting protein 4-like [Cucurbita moschata]1.1e-2696.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

XP_038902743.1 protein NOI4 [Benincasa hispida]7.8e-28100Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

TrEMBL top hitse value%identityAlignment
A0A5A7V1V9 RPM1-interacting protein 4 isoform X12.1e-2689.71Show/hide
Query:  IALRLEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        I+  LEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD+  +KNGSVLGKSQP
Subjt:  IALRLEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

A0A6J1FXH4 RPM1-interacting protein 4-like5.5e-2796.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

A0A6J1I4X6 uncharacterized protein LOC111469905 isoform X22.1e-2693.65Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG+PDSPAKDDP+YK+G+VLGKSQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

A0A6J1I7R1 uncharacterized protein LOC111469905 isoform X12.1e-2693.65Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG+PDSPAKDDP+YK+G+VLGKSQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

A0A6J1J928 RPM1-interacting protein 4-like5.5e-2796.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI43.5e-1569.49Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQP
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQP

Q8GYN5 RPM1-interacting protein 42.5e-0544.68Show/hide
Query:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKN
        +PKFG+WD N+P+SA+G+T IFNK R E+ +G      ++  PT+++
Subjt:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKN

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.4e-1981.82Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY-KNGSVLGK
        PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+P Y KNG VL K
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY-KNGSVLGK

AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein1.9e-1160Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG--------MPDSPAKDDPTYK
        PLPKFGEWDVNDPASAEGFTVIF KAR++KKT            ++ ++D+PT K
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG--------MPDSPAKDDPTYK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein1.3e-1758.33Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQPLEFAEKMVLLLA--SCRIVKLSRFD
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP+   +KM LL A  SC ++  ++ D
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQPLEFAEKMVLLLA--SCRIVKLSRFD

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein1.3e-1758.33Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQPLEFAEKMVLLLA--SCRIVKLSRFD
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP+   +KM LL A  SC ++  ++ D
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQPLEFAEKMVLLLA--SCRIVKLSRFD

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.5e-1669.49Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQP
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTY--KNGSVLGKSQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCAAGAAACTTGGTAAAATCTCATGTATGGTTGATTCTATGGAGTGCATTGCATTAAGGTTGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGA
TGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACAT
ACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTTTGGAATTTGCAGAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAAGCTTTCTCGGTTCGATAAATGG
GGTTCAGCAGAAATGTATAATCTGCAAATTCTCAACAACACGAGTGAAGCTGTATTTAGAACATGTGATGGATATTGCTGGACTCCATTTGTTAGAACTTTTGTCAATAA
TTTGGGGGTTTGGTTGGGGATGAAGATGATTAATCATCATTGTCTTGTTATGTTGTTCCTTCTGCATAAATGGCAATTGTTGGAGATTGTTGTTCATCATCATCCCTCCT
CCCCCTCTCCTCTAGTTGTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCAAGAAACTTGGTAAAATCTCATGTATGGTTGATTCTATGGAGTGCATTGCATTAAGGTTGGAAAAAGGCAGTAGCAGTCCATTACCAAAGTTCGGCGAATGGGA
TGTCAATGACCCAGCATCCGCCGAGGGATTCACGGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGATCCCACAT
ACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTTTGGAATTTGCAGAAAAAATGGTTTTGCTGCTTGCAAGCTGCAGAATCGTGAAGCTTTCTCGGTTCGATAAATGG
GGTTCAGCAGAAATGTATAATCTGCAAATTCTCAACAACACGAGTGAAGCTGTATTTAGAACATGTGATGGATATTGCTGGACTCCATTTGTTAGAACTTTTGTCAATAA
TTTGGGGGTTTGGTTGGGGATGAAGATGATTAATCATCATTGTCTTGTTATGTTGTTCCTTCTGCATAAATGGCAATTGTTGGAGATTGTTGTTCATCATCATCCCTCCT
CCCCCTCTCCTCTAGTTGTGAAATGA
Protein sequenceShow/hide protein sequence
MTKKLGKISCMVDSMECIALRLEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDPTYKNGSVLGKSQPLEFAEKMVLLLASCRIVKLSRFDKW
GSAEMYNLQILNNTSEAVFRTCDGYCWTPFVRTFVNNLGVWLGMKMINHHCLVMLFLLHKWQLLEIVVHHHPSSPSPLVVK