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Clc02G09280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationClcChr02:12495582..12496103
RNA-Seq ExpressionClc02G09280
SyntenyClc02G09280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060802.1 uncharacterized protein E6C27_scaffold137G00220 [Cucumis melo var. makuwa]3.1e-6880.75Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDD
        MSMLYFSISKR+SLP+QKFVQ        EEEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDD
Subjt:  MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDD

Query:  GSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

TYK11971.1 uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]4.8e-6983.89Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE
        MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEE
Subjt:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE

Query:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]4.8e-6983.89Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE
        MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEE
Subjt:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE

Query:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_011656887.2 uncharacterized protein LOC105435780 [Cucumis sativus]2.0e-6782.12Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDE
        MSMLYFSISKRNSLP++KFVQ  EEEEEEEDQK+L F SD LK SSAS PT  DLLSESECADDNFTTTEESEVEWPYFD R    +N  RSDDGSISDE
Subjt:  MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDE

Query:  ESLIEIALPTGHYVSHKFD----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVS KFD    DEDD+SFR+QKL+D Q +KNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSHKFD----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]6.1e-7285.56Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDE
        MSMLYFSISKRNSLP+QKFVQ  +EEEEEEDQK+L F SD LK SS S PTTGDLLSESECADDNFTTTEESEVEWPYFD RSY   N DRSDDGSISDE
Subjt:  MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDE

Query:  ESLIEIALPTGHYVSHKFD-----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSHKFD     DED MSFR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSHKFD-----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hitse value%identityAlignment
A0A0A0KCP7 Uncharacterized protein2.2e-6782.49Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEES
        MSMLYFSISKRNSLP++KFVQ EEEEEEDQK+L F SD LK SSAS PT  DLLSESECADDNFTTTEESEVEWPYFD R    +N  RSDDGSISDEES
Subjt:  MSMLYFSISKRNSLPVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEES

Query:  LIEIALPTGHYVSHKFD----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVS KFD    DEDD+SFR+QKL+D Q +KNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKFD----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A1S3CMD0 uncharacterized protein LOC1035021112.3e-6983.89Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE
        MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEE
Subjt:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE

Query:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A5A7UY43 Uncharacterized protein1.5e-6880.75Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDD
        MSMLYFSISKR+SLP+QKFVQ        EEEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDD
Subjt:  MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDD

Query:  GSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein2.3e-6983.89Show/hide
Query:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE
        MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEE
Subjt:  MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEE

Query:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        SLIEIALPTGHYVS KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC1110112034.4e-6077.84Show/hide
Query:  MSMLYFSISKRNSL------PVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGS
        MSMLYF+ISKRNSL      P++KFV+EEEEE E   E++F SDQ KFSSAS P TGDLLSESECADDNFTTTEESEVEWP+ DR   TA N DRS DGS
Subjt:  MSMLYFSISKRNSL------PVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGS

Query:  ISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        ISDEESLIEIALPTGHYVSHKFD      DEDDMSF  QKLSD Q +KNLVE+LAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ISDEESLIEIALPTGHYVSHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04480.1 unknown protein1.9e-1850.56Show/hide
Query:  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        K  +  DDG+I D+ESLIE++LP+GHY+ H ++   +  +   K+ D +    L ++L E+ND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein1.8e-1346.74Show/hide
Query:  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFD---DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA
        KN D  DDG+I DEESLIE++LP+GHY+ H +     + D    +  + D +    L+++ AE     E++NLIEIDIS+GSIK SRF+I+A
Subjt:  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFD---DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTC
TGATCAATTGAAATTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCAGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGT
GGCCGTATTTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGATGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACAT
TACGTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATATTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAACGA
CATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTC
TGATCAATTGAAATTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCAGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGT
GGCCGTATTTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGATGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACAT
TACGTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATATTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAACGA
CATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA
Protein sequenceShow/hide protein sequence
MSMLYFSISKRNSLPVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGH
YVSHKFDDEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA