CuGenDBv2

Gene ID	Clc02G09370
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	F-box protein SNE
Genome location	ClcChr02:13018243..13018701
RNA-Seq Expression	Clc02G09370
Synteny	Clc02G09370
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

3.6e-76

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKF+INDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

5.5e-77

96.05

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Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKF+INDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI G+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

1.4e-75

94.74

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Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKF+IND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

3.0e-75

93.42

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Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKF+INDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLT SGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

2.9e-78

97.37

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Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKF+INDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

2.7e-77

96.05

Show/hide

Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKF+INDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI G+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

6.6e-76

94.74

Show/hide

Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKF+IND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

1.7e-76

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKF+INDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLT SGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

1.5e-75

93.42

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Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKF+INDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLT SGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

1.5e-75

93.42

Show/hide

Query:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKF+INDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLT SGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.1e-10

34.78

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPSSVKAVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       ++AVV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPSSVKAVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

7.1e-35

53.25

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Query:  IPEPNEKRRK------FVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKAVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKAVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

5.0e-12

35.04

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTESGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTESGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

3.5e-13

35.04

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTESGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTESGR

AT5G48170.1 F-box family protein

5.1e-36

53.25

Show/hide

Query:  IPEPNEKRRK------FVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKAVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKAVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAATTCGTAATCAACGACAATCTCGACATTCTGATTGAAATCCTCAAGCGGCTAGACGGACCGTCGCT
CGGCGTCGCGACCTGCGTCTGCCGGCTCTGGTGCACAATCGCTCGAAGTGAATCGGTGTGGGAACAAGTCTGCTTCCGTCACGTAACATCGCCGCTTCCGTCGTCAGTGA
AAGCGGTGGTGGCCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTCAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAG
GATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGCGGCTCACCGAGAGTGGGAGAATCAGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTG
CAACACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFVINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKAVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQ
DEVQLSLSLFCVDYYERLTESGRISGDASALSLMFLCNTVNV

Clc02G09370 (gene) of Watermelon (cordophanus) v2 genome