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Clc02G09570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr02:13740719..13748393
RNA-Seq ExpressionClc02G09570
SyntenyClc02G09570
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833277.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.1e-0758.82Show/hide
Query:  CPVCGKGHSGECFSKDRCFACGMIGHQRKQCNASMDFCNQAKEMKREISCK
        CPVC KGH+GEC  KDRCFACG  GH RKQC A  +  +Q K  +R+I  K
Subjt:  CPVCGKGHSGECFSKDRCFACGMIGHQRKQCNASMDFCNQAKEMKREISCK
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGGGCTGCTGGAAACCCCCAAATTTATAGAGTTTGGCCGCCCAAAAATTTACCAAAAATACAAATTTTTCATTTAAGGAAAGCTGGCGCCGCGGTGCTAGGGCT
GCATCAGAAAAGTTTGCTCTTGGGTTTTAGCTCCGCGGCAGCGCCGTCTAAGCGCCGTGATGTTGTGATGCGTTCAAAAATATTATTCTTGGGCATTAGCGCCGCGGCAG
CGCCGCAACGCTGTCATGCGTTCAACAAGGATGCGTCGAGCGCTGCGGCAACGCCGTTTCGGCCCTGCGGTGCTACTATGCGTCCAGAACGATGCGTTCATGTTTCAGCA
CCGCGGTGCTACTATGCATCCGGAACGATGTGTTCATGTTTCAGCGCCGCGGCGCTATCCCAAAATTCGCCCTTTTTAGTTTTTCAGCTCTTTTTCACCAGCATAGTTTA
CGAGAAACCTGGGGAAGGTCAAGTGAATTTTAGCAATAAGTTGAAAGAGAAATTAAGGATTACTAATCGGAAAAGAATCTCTGAGAGGAAGGTTGAATGCGGTAAGTTCA
AAGTATGGAAGTTGCAATGTAGTAAGATTGCGGGAAATTGTTATGAGCAATCGAACAAGCTAAGGCAGGTATATGCCGGAACTTTGGTGTCACCATGTGTTGGAAGTGAA
GTTAGAGCTCGGTCAGGAAAAGATGTACTTAACCTACCATGCGTTGATAAGAATACCTTGAATTGGAGAGTAGTTGTATGTGATAGGCTGCAGCTATGTGCTGAAGGTTT
GCTATGTATTGATAAGCTATGTGATGGGCAGCAGCTATGCTCTGAAGCATGCGTCCAAAAGTTGAGCAAGAGTAAATGGTCGGGGCTATGCGTTGATGAGATTGTTAGAA
CCAGCAGGCATGCGTTGGTTGAGATCAGTAGAAGGGAAAGCAAAGGGAAACGAAAACGCTTGACGATCAGGTGCCCAGTTTGCGGAAAAGGACATTCGGGGGAATGTTTT
AGTAAAGATAGATGCTTTGCATGCGGAATGATAGGACATCAACGGAAACAATGCAATGCATCTATGGACTTTTGCAACCAAGCTAAAGAGATGAAAAGAGAGATTTCCTG
TAAGAAATGTGGACGACGACATAGAGAAGATTATGAAGGAAGAGAGGATGTTTGTTATATGTGTGAGCAGCCAGGGTGTAACACCCTATCTCAGAACCTAGGTATTCAAG
ATGAAATTCTATGCGTTGAGATGAATGGTATTAGGAAAAGAGTGGATGTCTCACCAAGGCGCTGCCGCGGCGCTGAGGCAAAAAAGCATCAGCATGGACGCAGAGCAGCA
ATGCGGCGCTGGGAAGGCGTTGCTTCGACGCATCGGCGCTGTGACGGCACTGCCGCGGCGCGAAAACCGGAGAGCAACTTAATTTTGGTCGCAACGCTAGCGCCGCGGCG
CTATGCGTCAGCGCCGTGGCGCCAGCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTGGGCTGCTGGAAACCCCCAAATTTATAGAGTTTGGCCGCCCAAAAATTTACCAAAAATACAAATTTTTCATTTAAGGAAAGCTGGCGCCGCGGTGCTAGGGCT
GCATCAGAAAAGTTTGCTCTTGGGTTTTAGCTCCGCGGCAGCGCCGTCTAAGCGCCGTGATGTTGTGATGCGTTCAAAAATATTATTCTTGGGCATTAGCGCCGCGGCAG
CGCCGCAACGCTGTCATGCGTTCAACAAGGATGCGTCGAGCGCTGCGGCAACGCCGTTTCGGCCCTGCGGTGCTACTATGCGTCCAGAACGATGCGTTCATGTTTCAGCA
CCGCGGTGCTACTATGCATCCGGAACGATGTGTTCATGTTTCAGCGCCGCGGCGCTATCCCAAAATTCGCCCTTTTTAGTTTTTCAGCTCTTTTTCACCAGCATAGTTTA
CGAGAAACCTGGGGAAGGTCAAGTGAATTTTAGCAATAAGTTGAAAGAGAAATTAAGGATTACTAATCGGAAAAGAATCTCTGAGAGGAAGGTTGAATGCGGTAAGTTCA
AAGTATGGAAGTTGCAATGTAGTAAGATTGCGGGAAATTGTTATGAGCAATCGAACAAGCTAAGGCAGGTATATGCCGGAACTTTGGTGTCACCATGTGTTGGAAGTGAA
GTTAGAGCTCGGTCAGGAAAAGATGTACTTAACCTACCATGCGTTGATAAGAATACCTTGAATTGGAGAGTAGTTGTATGTGATAGGCTGCAGCTATGTGCTGAAGGTTT
GCTATGTATTGATAAGCTATGTGATGGGCAGCAGCTATGCTCTGAAGCATGCGTCCAAAAGTTGAGCAAGAGTAAATGGTCGGGGCTATGCGTTGATGAGATTGTTAGAA
CCAGCAGGCATGCGTTGGTTGAGATCAGTAGAAGGGAAAGCAAAGGGAAACGAAAACGCTTGACGATCAGGTGCCCAGTTTGCGGAAAAGGACATTCGGGGGAATGTTTT
AGTAAAGATAGATGCTTTGCATGCGGAATGATAGGACATCAACGGAAACAATGCAATGCATCTATGGACTTTTGCAACCAAGCTAAAGAGATGAAAAGAGAGATTTCCTG
TAAGAAATGTGGACGACGACATAGAGAAGATTATGAAGGAAGAGAGGATGTTTGTTATATGTGTGAGCAGCCAGGGTGTAACACCCTATCTCAGAACCTAGGTATTCAAG
ATGAAATTCTATGCGTTGAGATGAATGGTATTAGGAAAAGAGTGGATGTCTCACCAAGGCGCTGCCGCGGCGCTGAGGCAAAAAAGCATCAGCATGGACGCAGAGCAGCA
ATGCGGCGCTGGGAAGGCGTTGCTTCGACGCATCGGCGCTGTGACGGCACTGCCGCGGCGCGAAAACCGGAGAGCAACTTAATTTTGGTCGCAACGCTAGCGCCGCGGCG
CTATGCGTCAGCGCCGTGGCGCCAGCGTTAA
Protein sequenceShow/hide protein sequence
MIWAAGNPQIYRVWPPKNLPKIQIFHLRKAGAAVLGLHQKSLLLGFSSAAAPSKRRDVVMRSKILFLGISAAAAPQRCHAFNKDASSAAATPFRPCGATMRPERCVHVSA
PRCYYASGTMCSCFSAAALSQNSPFLVFQLFFTSIVYEKPGEGQVNFSNKLKEKLRITNRKRISERKVECGKFKVWKLQCSKIAGNCYEQSNKLRQVYAGTLVSPCVGSE
VRARSGKDVLNLPCVDKNTLNWRVVVCDRLQLCAEGLLCIDKLCDGQQLCSEACVQKLSKSKWSGLCVDEIVRTSRHALVEISRRESKGKRKRLTIRCPVCGKGHSGECF
SKDRCFACGMIGHQRKQCNASMDFCNQAKEMKREISCKKCGRRHREDYEGREDVCYMCEQPGCNTLSQNLGIQDEILCVEMNGIRKRVDVSPRRCRGAEAKKHQHGRRAA
MRRWEGVASTHRRCDGTAAARKPESNLILVATLAPRRYASAPWRQR