; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G09660 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09660
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear cap-binding protein subunit 2
Genome locationClcChr02:13803108..13806920
RNA-Seq ExpressionClc02G09660
SyntenyClc02G09660
Gene Ontology termsGO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005846 - nuclear cap binding complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 - Nuclear cap-binding protein subunit 2
IPR034148 - NCBP2, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026974.1 Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-13678.66Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DPSKLSVYRDRRF GTQDEFE AL +STTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYG------------------------
        VDFDWGFQDGRQWGRGRSGGQVLFL YVTF T SLPSLPVYFL L C+QVRDEYRTDYDPDILFSFNT TH IDY                         
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYG------------------------

Query:  --------------NPQGGYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH
                         GGYGKLVQKELE QRQLVDYGT SLGSMPPVM Q+G HGGSHGHG+RHGRDYHHRKR+RDDD HAHES KRTSD+ESRRN +H
Subjt:  --------------NPQGGYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH

Query:  ESRLEKNPRFRESGDSDEEDDDDQKQRH
        ESR EKNPRFRESGDSDEEDDDD+KQRH
Subjt:  ESRLEKNPRFRESGDSDEEDDDDQKQRH

XP_004137136.1 nuclear cap-binding protein subunit 2 [Cucumis sativus]3.8e-12078.97Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

XP_008464581.1 PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo]3.8e-12079.31Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLSVYRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

XP_022986365.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima]4.2e-11978.28Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
         DFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSMP V+PQYGKHGGSHG+GHRHGRDYH+RKRYRDDD HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

XP_038900343.1 nuclear cap-binding protein subunit 2 [Benincasa hispida]1.0e-12080.62Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
        TGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDDD HAHES KRTSDYESRRNPDH+SR EKNPRFRESGDSDEEDDDDQKQR
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR

TrEMBL top hitse value%identityAlignment
A0A0A0KVX7 Nuclear cap-binding protein subunit 27.2e-12581.03Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDPDILFSF            +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

A0A1S3CLT9 Nuclear cap-binding protein subunit 21.8e-12079.31Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLSVYRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

A0A6J1CIF4 Nuclear cap-binding protein subunit 21.3e-11878.2Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLSVYRDRRF GTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
        TGSLGS+PPV+PQYGKHGG HGHGHRHGRDY HRKRYRDDDHHAHES KRTSDYESRRNPDHESR EKNPRFRESGDSDEEDDDD+KQR
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR

A0A6J1FX36 Nuclear cap-binding protein subunit 22.9e-11877.93Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
         DFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGS+P V+PQYGKHGGSHG+G RHGRDYH+RKRYRDDD HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

A0A6J1J7C7 Nuclear cap-binding protein subunit 22.0e-11978.28Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
         DFDWGFQDGRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
        TGSLGSMP V+PQYGKHGGSHG+GHRHGRDYH+RKRYRDDD HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

SwissProt top hitse value%identityAlignment
B1WC40 Nuclear cap-binding protein subunit 27.1e-4551.61Show/hide
Query:  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDF
        +LS YRD+ F G  +E E  L+ S T+YVGN+SFYTTEEQ+YELF ++G+IKKIIMGLDK  KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+
Subjt:  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDF

Query:  DWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKE
        D GF++GRQ+GRGRSGG                            QVRDEYR DYD                   +GGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKE

B7P877 Nuclear cap-binding protein subunit 25.5e-4550Show/hide
Query:  LSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFD
        LS YRD+ F G++ E E  L+ STT+YVGNMSFYTTEEQ+YELF + G++KK+IMGLD+  KTPCGFCFV YY+RED E+A++Y++GT LDDR IR D+D
Subjt:  LSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFD

Query:  WGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKEL
         GF +GRQ+GRG+SGG                            QVRDEYRTDYD                 + +GGYGKL+ + +
Subjt:  WGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKEL

Q84L14 Nuclear cap-binding protein subunit 21.1e-8059.79Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        DP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELF RAGEI+KIIMGLDKNSKTPCGFCF+LYYSRED EDAVKYISGT+LDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGF++GRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGK+VQKELE QR+LVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMPQYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
               P   PQY +     G+G  +R+ RDY  RKRYR+D+     S +R  D E +R+       EKNPRFRE GDSDEEDDD  K+R
Subjt:  TGSLGSMPPVMPQYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR

Q9CQ49 Nuclear cap-binding protein subunit 27.1e-4551.61Show/hide
Query:  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDF
        +LS YRD+ F G  +E E  L+ S T+YVGN+SFYTTEEQ+YELF ++G+IKKIIMGLDK  KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+
Subjt:  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDF

Query:  DWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKE
        D GF++GRQ+GRGRSGG                            QVRDEYR DYD                   +GGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKE

Q9XFD1 Nuclear cap-binding protein subunit 22.0e-9262.71Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQ+GRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
        TGSLG+ P   P  YG   + GG++G G  +RHGR  +HRKR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Subjt:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-0832.91Show/hide
Query:  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD
        ++  TTVY+ N+    T E + EL+   GE+K+  +  DKN + P G   V+Y  R D   A++  +  +LD RP++++
Subjt:  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-0832.91Show/hide
Query:  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD
        ++  TTVY+ N+    T E + EL+   GE+K+  +  DKN + P G   V+Y  R D   A++  +  +LD RP++++
Subjt:  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-0833.33Show/hide
Query:  VALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD
        +A + S  ++V  +S YTT++ + +LF   G+IK+  +  D  ++ P GF F+ + S +D   A+K + G I+D R I V+
Subjt:  VALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVD

AT5G44200.1 CAP-binding protein 201.5e-9362.71Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQ+GRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
        TGSLG+ P   P  YG   + GG++G G  +RHGR  +HRKR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Subjt:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR

AT5G44200.2 CAP-binding protein 201.5e-9362.71Show/hide
Query:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR
        + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIR
Subjt:  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG
        VDFDWGFQ+GRQWGRGRSGG                            QVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYG
Subjt:  VDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYG

Query:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR
        TGSLG+ P   P  YG   + GG++G G  +RHGR  +HRKR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Subjt:  TGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGACCCATCGAAGCTATCTGTTTATCG
GGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATG
AGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACC
GAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGG
TGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAA
CGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAA
CAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAG
AGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGAC
TGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGACCCATCGAAGCTATCTGTTTATCG
GGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATG
AGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACC
GAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGG
TGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAA
CGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAA
CAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAG
AGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGAC
TGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAACCCGAGTGTGATTTTCATATCATAATGTGACGA
GGAATCATTTACACTGGTGTTTTGTAGTTGAGCGCAAAGTGATAAGGGACAAGTTGGTTGTGCATGTCAAAACTAATGGGTTTATTCTTTTTTCATGCCATTAGGTACTT
TGTGCTATTACAAGAATGAAGGAATGACCATGAATGGCTGTCTGTACTGTTTATTACTATAAGAATCAAGTAGACATTTTGTCGGAACTATCTTCAGAAAAATGAAGAAT
CCGATTCC
Protein sequenceShow/hide protein sequence
MPNVAVLVWASCGSRLLVFQIMLRHVVVDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDT
EDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEE
QRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH