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Clc02G09670 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09670
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr02:13808714..13810914
RNA-Seq ExpressionClc02G09670
SyntenyClc02G09670
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032937.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2256Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +QV+FILESLPKSF+ F+ N  +NKIE+N+T+L NEL+ FQ++ + K  E E NV +  +K KRGSSS  ++G S S + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K  KGK     KGKK  AEKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

KAA0054309.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2255.56Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVI--SKKSKRGSSSGIES--GTSPSKKN
        MM HFN+AE+NG VIDE SQVSFILESLP+SFL FR N VMNKI Y +T+L NEL+TF+S+M+ K  +GE+NV   ++K  RGS+SG +S   +S +KK 
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVI--SKKSKRGSSSGIES--GTSPSKKN

Query:  MKKNG----KGKATANKKGKKEVAEKGKCFHDNSQ
         KK G    K    A K  KK  A KG CFH N +
Subjt:  MKKNG----KGKATANKKGKKEVAEKGKCFHDNSQ

KAA0059877.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2357.6Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +QVSFILESLPKSF+ F+ N  +NKIE+N+T+L NEL+ FQ++ + K  E E NV +  +K KRGSSS  + G S S + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K GKGK     KGKK  AEKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

KAA0063026.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2255.2Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +Q+SFILESLPKSF+ F++N  +NKIE+N+T+L N+L+ FQ++ + K  E E NV + K   KRGSSS  ++G S   + +K
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K G GK     KGKK V EKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

TYK25792.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-2256Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKSK--RGSSSGIESGTSPSKKNMK
        M+ HFNIAEVNG VIDE +QVSFILESLPKSF+ F+IN  +NKIE+N+T+L NEL+ FQ++ + K  E E NV + K K  RGSSS  + G S   + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKSK--RGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
          GKGK     KGKK  AEK KC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

TrEMBL top hitse value%identityAlignment
A0A5A7SUC7 Gag/pol protein5.8e-2356Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +QV+FILESLPKSF+ F+ N  +NKIE+N+T+L NEL+ FQ++ + K  E E NV +  +K KRGSSS  ++G S S + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K  KGK     KGKK  AEKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

A0A5A7ULH1 Gag/pol protein5.8e-2355.56Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVI--SKKSKRGSSSGIES--GTSPSKKN
        MM HFN+AE+NG VIDE SQVSFILESLP+SFL FR N VMNKI Y +T+L NEL+TF+S+M+ K  +GE+NV   ++K  RGS+SG +S   +S +KK 
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVI--SKKSKRGSSSGIES--GTSPSKKN

Query:  MKKNG----KGKATANKKGKKEVAEKGKCFHDNSQ
         KK G    K    A K  KK  A KG CFH N +
Subjt:  MKKNG----KGKATANKKGKKEVAEKGKCFHDNSQ

A0A5A7V9B0 Gag/pol protein7.6e-2355.2Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +Q+SFILESLPKSF+ F++N  +NKIE+N+T+L N+L+ FQ++ + K  E E NV + K   KRGSSS  ++G S   + +K
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K G GK     KGKK V EKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

A0A5D3C306 Gag/pol protein1.3e-2256.45Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK
        MM HFNIA+VNG VID+ SQVSFILESLPKSF+ F+ N  +NKIE+N+T+L NEL+ FQ++ + K  E E NV + K   KRGSSS  + G S S + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKS--KRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCF
        K GKGK     KGKK   EKGKC+
Subjt:  KNGKGKATANKKGKKEVAEKGKCF

A0A5D3DMH3 Gag/pol protein6.9e-2457.6Show/hide
Query:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK
        MM HFNIAEVNG  IDE +QVSFILESLPKSF+ F+ N  +NKIE+N+T+L NEL+ FQ++ + K  E E NV +  +K KRGSSS  + G S S + ++
Subjt:  MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVIS--KKSKRGSSSGIESGTSPSKKNMK

Query:  KNGKGKATANKKGKKEVAEKGKCFH
        K GKGK     KGKK  AEKGKC+H
Subjt:  KNGKGKATANKKGKKEVAEKGKCFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGACCCACTTCAATATCGCAGAGGTAAATGGAGTTGTTATAGACGAAAGGAGCCAAGTTAGCTTTATACTTGAATCTCTTCCGAAGAGTTTTCTGTCATTCCGCAT
TAACACGGTGATGAATAAGATAGAGTATAATATGACTTCTCTTTTCAATGAACTTGAGACATTTCAGTCCATGATGAGATCAAAAAGGCATGAAGGAGAAATAAATGTTA
TTTCCAAGAAATCCAAAAGAGGATCGTCCTCGGGGATAGAATCTGGAACTTCTCCTTCAAAGAAAAATATGAAGAAAAATGGAAAAGGGAAGGCCACTGCAAATAAAAAA
GGCAAGAAGGAAGTTGCCGAAAAAGGAAAGTGTTTTCACGACAACTCACAACCCGGTGCGCGAGCAAGACGCCAGCCATCCACCTGCGAGCATTCCCATGCAATTGTAGC
AACCTTCGACGACTCATTCCTCAGCAAAAAAAGTGGTAAAACAGCATTCAAGCAACGTTTTCCTCCCTTTCGACGAGGTTTGTCATTTACCCATTGTATTCCGACCGTGG
ATTTGAGTTACCCACTTATTAACGACCTCTATTATGTTAGGTTAAGTATATTCGAACACTCCCAGCAAGGATTCGAATCTGTTTGGCTTTGGATTGATATCGGACACGAA
CCAGGGTTGAGGCTGCTCAGCGGCGTTCAGTTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGACCCACTTCAATATCGCAGAGGTAAATGGAGTTGTTATAGACGAAAGGAGCCAAGTTAGCTTTATACTTGAATCTCTTCCGAAGAGTTTTCTGTCATTCCGCAT
TAACACGGTGATGAATAAGATAGAGTATAATATGACTTCTCTTTTCAATGAACTTGAGACATTTCAGTCCATGATGAGATCAAAAAGGCATGAAGGAGAAATAAATGTTA
TTTCCAAGAAATCCAAAAGAGGATCGTCCTCGGGGATAGAATCTGGAACTTCTCCTTCAAAGAAAAATATGAAGAAAAATGGAAAAGGGAAGGCCACTGCAAATAAAAAA
GGCAAGAAGGAAGTTGCCGAAAAAGGAAAGTGTTTTCACGACAACTCACAACCCGGTGCGCGAGCAAGACGCCAGCCATCCACCTGCGAGCATTCCCATGCAATTGTAGC
AACCTTCGACGACTCATTCCTCAGCAAAAAAAGTGGTAAAACAGCATTCAAGCAACGTTTTCCTCCCTTTCGACGAGGTTTGTCATTTACCCATTGTATTCCGACCGTGG
ATTTGAGTTACCCACTTATTAACGACCTCTATTATGTTAGGTTAAGTATATTCGAACACTCCCAGCAAGGATTCGAATCTGTTTGGCTTTGGATTGATATCGGACACGAA
CCAGGGTTGAGGCTGCTCAGCGGCGTTCAGTTGCTTTAA
Protein sequenceShow/hide protein sequence
MMTHFNIAEVNGVVIDERSQVSFILESLPKSFLSFRINTVMNKIEYNMTSLFNELETFQSMMRSKRHEGEINVISKKSKRGSSSGIESGTSPSKKNMKKNGKGKATANKK
GKKEVAEKGKCFHDNSQPGARARRQPSTCEHSHAIVATFDDSFLSKKSGKTAFKQRFPPFRRGLSFTHCIPTVDLSYPLINDLYYVRLSIFEHSQQGFESVWLWIDIGHE
PGLRLLSGVQLL