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Clc02G09803 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G09803
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionActivating signal cointegrator complex subunit 2
Genome locationClcChr02:14339564..14346258
RNA-Seq ExpressionClc02G09803
SyntenyClc02G09803
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591418.1 Transcription factor basic helix-loop-helix 85, partial [Cucurbita argyrosperma subsp. sororia]5.6e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
KAG7024299.1 Activating signal cointegrator 1 complex subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
XP_022936905.1 activating signal cointegrator 1 complex subunit 2-like [Cucurbita moschata]5.6e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
XP_022976975.1 activating signal cointegrator 1 complex subunit 2-like [Cucurbita maxima]5.6e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
XP_038897592.1 activating signal cointegrator 1 complex subunit 2 isoform X1 [Benincasa hispida]5.1e-2298.21Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
TrEMBL top hitse value%identityAlignment
A0A5A7VB30 Activating signal cointegrator 1 complex subunit 2-like isoform X13.0e-2091.07Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        +RWYDFPH GA G VAGVIVGEYELSRRVFM LYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
A0A6J1CEQ5 activating signal cointegrator 1 complex subunit 2 isoform X13.5e-2194.64Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANG+VAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
A0A6J1FF14 activating signal cointegrator 1 complex subunit 2-like2.7e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
A0A6J1FRD2 uncharacterized protein LOC1114462207.9e-2189.29Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAG+I+GE+EL RRVFMVLYRMSSNRDPGARAADSLS+KDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
A0A6J1IKZ3 activating signal cointegrator 1 complex subunit 2-like2.7e-2196.43Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
        SRWYDFPH GANGIVAGVIVGE ELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27752.1 Ubiquitin system component Cue protein3.9e-2083.64Show/hide
Query:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDH
        SRWYDFP  G  GIVAGVIVGE EL RRVFMVLYR+SSNRDPGA+AADSLS KDH
Subjt:  SRWYDFPHCGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCACTACTATGCACCTCCTACGCTCACCATGAACTTTGCCGCTTATCTCGCTCCATGCCGTCGCTCAGCTTGCTCCATGCCGCCGCTTCACCTCTAAGCGCGAT
CCATGCCTCGCACAAGTCTCAGACTCATGCCCACTATCGCTTAGCTCGCTCCACACTAACACTTCACCTCTCAGCTTGTTCCACATCGTCGCAACACCACTTTCGCACCC
ACATGCCTGCTCGCCGCCATCAGAATTTTGCTGCGAGTAGATGGTATGATTTTCCACATTGTGGAGCAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTA
AGTCGTCGTGTTTTCATGGTATTATATCGCATGTCTTCTAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGGCTACCATCCACCTCC
TGCACGACAGCTGCACGCAGTGTATGCAGCCAACGCCTACGCCCTTATGCTCCTGTGTGGCAGACGCTGCCCACGCTCATCAGCGCCTGCCCACGCACGCCCCACACCCC
TTGCCTTCCACACATGCTTACCTTCTACCCATGCTGCATGCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCTCACTACTATGCACCTCCTACGCTCACCATGAACTTTGCCGCTTATCTCGCTCCATGCCGTCGCTCAGCTTGCTCCATGCCGCCGCTTCACCTCTAAGCGCGAT
CCATGCCTCGCACAAGTCTCAGACTCATGCCCACTATCGCTTAGCTCGCTCCACACTAACACTTCACCTCTCAGCTTGTTCCACATCGTCGCAACACCACTTTCGCACCC
ACATGCCTGCTCGCCGCCATCAGAATTTTGCTGCGAGTAGATGGTATGATTTTCCACATTGTGGAGCAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTA
AGTCGTCGTGTTTTCATGGTATTATATCGCATGTCTTCTAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGGCTACCATCCACCTCC
TGCACGACAGCTGCACGCAGTGTATGCAGCCAACGCCTACGCCCTTATGCTCCTGTGTGGCAGACGCTGCCCACGCTCATCAGCGCCTGCCCACGCACGCCCCACACCCC
TTGCCTTCCACACATGCTTACCTTCTACCCATGCTGCATGCCCATAG
Protein sequenceShow/hide protein sequence
MTSLLCTSYAHHELCRLSRSMPSLSLLHAAASPLSAIHASHKSQTHAHYRLARSTLTLHLSACSTSSQHHFRTHMPARRHQNFAASRWYDFPHCGANGIVAGVIVGEYEL
SRRVFMVLYRMSSNRDPGARAADSLSLKDHGGYHPPPARQLHAVYAANAYALMLLCGRRCPRSSAPAHARPTPLAFHTCLPSTHAACP