| GenBank top hits | e value | %identity | Alignment |
|---|
| AAO73521.1 gag-pol polyprotein [Glycine max] | 2.4e-147 | 35.61 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL + HEGTSKVK+SRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + +DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL G S+I D R+ +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS------------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS------------------------------------
Query: ----IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTL
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T VKFIREKS TF V + L
Subjt: ----IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTL
Query: CCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQ
+LQRE+ + +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: CCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQ
Query: TNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D D
Subjt: TNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD
Query: KNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| AAO73523.1 gag-pol polyprotein [Glycine max] | 4.4e-146 | 35.54 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DA +IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + ++DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL+G S+I D A R +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
Query: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
+ + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS TF V +
Subjt: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
Query: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
L +LQRE+ +F +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
Query: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D D
Subjt: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
Query: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| AAO73525.1 gag-pol polyprotein [Glycine max] | 8.7e-142 | 35.19 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDED------------------------------
+EGG PP+LDG+NY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++ED
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDED------------------------------
Query: ----AWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK---
+IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+++ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: ----AWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK---
Query: -----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC
KN A+V + ++DE + ++ LL KQF KVL R D+R ++ P K H + + S K I+C
Subjt: -----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC
Query: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLME
CEGYGH +AE P LK++ K S D D + E +DSD ++ AL G S + + +I D R+ +KS+ + L+++I L
Subjt: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLME
Query: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK----------------------------------------------------
+ I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
Query: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS+TF V
Subjt: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
Query: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
+ L +LQRE+ KF +FC EGI HE+S++I+PQ+NG+VERK TLQ+ R MLH K L WAEA+NTAC++HNR++LR G
Subjt: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
Query: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
T T Y +W+ RKP +K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD AR +D +A
Subjt: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
Query: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
D K+ +K S+S+ +P + D+ +I+K P E IIGD N GVTTR ++
Subjt: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| AAO73527.1 gag-pol polyprotein [Glycine max] | 3.6e-148 | 35.73 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL + HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + ++DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL G S+I D A R +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE M KSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
Query: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS TF V +
Subjt: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
Query: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
L +LQRE+ +F +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
Query: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D L D
Subjt: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
Query: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| AAO73529.1 gag-pol polyprotein [Glycine max] | 6.4e-145 | 35.29 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDG+NY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+++ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC
KN A+V + ++DE + ++ L KQF KVL R D+R ++ + D + + + + ++ S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC
Query: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLME
CEGYGH +AE P LK++ K S D D + E +DSD ++ AL G S+I D F R +KS+ + L+++I L
Subjt: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLME
Query: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGKQ---------------------------------------------------
+ I +LK E+ +LE MTKSI+MLN +D ++++L GK+
Subjt: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGKQ---------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
Query: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS+TF V
Subjt: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
Query: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
+ L +LQRE+ KF +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR G
Subjt: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
Query: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
T T Y +W+ RKP +K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD AR +D +A
Subjt: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
Query: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
D K+ + +S+S+ +P + D+ + S +I+K HP E IIGD N GVTTR ++
Subjt: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| Q84VH6 Gag-pol polyprotein | 3.1e-145 | 35.29 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDG+NY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+++ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC
KN A+V + ++DE + ++ L KQF KVL R D+R ++ + D + + + + ++ S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC
Query: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLME
CEGYGH +AE P LK++ K S D D + E +DSD ++ AL G S+I D F R +KS+ + L+++I L
Subjt: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLME
Query: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGKQ---------------------------------------------------
+ I +LK E+ +LE MTKSI+MLN +D ++++L GK+
Subjt: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGKQ---------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
Query: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS+TF V
Subjt: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
Query: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
+ L +LQRE+ KF +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR G
Subjt: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
Query: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
T T Y +W+ RKP +K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD AR +D +A
Subjt: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
Query: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
D K+ + +S+S+ +P + D+ + S +I+K HP E IIGD N GVTTR ++
Subjt: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| Q84VH8 Gag-pol polyprotein | 1.8e-148 | 35.73 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL + HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + ++DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL G S+I D A R +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE M KSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
Query: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS TF V +
Subjt: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
Query: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
L +LQRE+ +F +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
Query: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D L D
Subjt: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
Query: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| Q84VI0 Gag-pol polyprotein | 4.2e-142 | 35.19 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDED------------------------------
+EGG PP+LDG+NY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++ED
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDED------------------------------
Query: ----AWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK---
+IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+++ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: ----AWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK---
Query: -----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC
KN A+V + ++DE + ++ LL KQF KVL R D+R ++ P K H + + S K I+C
Subjt: -----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC
Query: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLME
CEGYGH +AE P LK++ K S D D + E +DSD ++ AL G S + + +I D R+ +KS+ + L+++I L
Subjt: TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLME
Query: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK----------------------------------------------------
+ I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: DNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS---------------------------------
Query: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS+TF V
Subjt: -------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
Query: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
+ L +LQRE+ KF +FC EGI HE+S++I+PQ+NG+VERK TLQ+ R MLH K L WAEA+NTAC++HNR++LR G
Subjt: QTLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
Query: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
T T Y +W+ RKP +K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD AR +D +A
Subjt: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLA
Query: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
D K+ +K S+S+ +P + D+ +I+K P E IIGD N GVTTR ++
Subjt: DKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| Q84VI2 Gag-pol polyprotein | 2.1e-146 | 35.54 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DA +IL HEGTSKVKMSRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + ++DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL+G S+I D A R +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS----------------------------------
Query: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
+ + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T V FIREKS TF V +
Subjt: ------IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQ
Query: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
L +LQRE+ +F +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: TLCCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGT
Query: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D D
Subjt: TQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLAD
Query: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KDKNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| Q84VI4 Gag-pol polyprotein | 1.1e-147 | 35.61 | Show/hide |
Query: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
+EGG PP+LDGSNY YWKARM FLKS+D++TWK VI W P++ D EGK EL E+DWT++E
Subjt: REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL--EKDWTEDE-------------------------------
Query: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
DAW+IL + HEGTSKVK+SRLQLL KFE+LKM EEE I +F+ +L++ N +L E+I+ E+LVRK+LR LPKRFDMKVT IEEA I M+
Subjt: --DAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMK----
Query: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
KN A+V + +DE + ++ LL KQF KVL R DKR ++ P K + + S K I+C
Subjt: ----------------STYKNDAYVVKIK--------ESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT
Query: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMED
CEGYGH AE P LK+ K S +C +D + E +DSD ++ AL G S+I D R+ +KS+ + L+++I L +
Subjt: ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMED
Query: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
I ELK E+ +LE MTKSI+MLN +D ++++L GK
Subjt: NHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGK-----------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS------------------------------------
V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+ + ++M +RS D+
Subjt: -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDS------------------------------------
Query: ----IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTL
I + V I L +C +CQ+GKQV++SH++ TT VLELLH+DLMG MQVESL GK+YA V VDDF+R+T VKFIREKS TF V + L
Subjt: ----IAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTL
Query: CCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQ
+LQRE+ + +FC EGI HE+S++I+PQ+NG+VERK TLQ+ AR MLH K L WAEA+NTAC++HNR++LR GT
Subjt: CCQLQREQ------------------KFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQ
Query: TNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD
T Y +W+ RKP++K+FHIF S C ILADRE R+K D KSD GIFLGYS+NSRAYRVFN+RT++ MESINVV+DD + AR +D D D
Subjt: TNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD
Query: KNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
+ +++E+S+ ES +Q + S++I+K HP E IIGD N GVTTR ++
Subjt: KNLVPVDKDSESSNLDPKESVSDQ--IKCSSKIKKNHPLENIIGDLNSGVTTRRKD
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.7e-21 | 25.63 | Show/hide |
Query: VCDDCQVGKQVRVSHKRALVCT-TKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTLCCQLQR---------------
+C+ C GKQ R+ K+ T K L ++H D+ G + +L+ K Y ++ VD F Y I+ KS+ F + Q + +
Subjt: VCDDCQVGKQVRVSHKRALVCT-TKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTLCCQLQR---------------
Query: ---EQKFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRP--GTTQTNYGLWRRRKPNIKYFHIF
+ FC +GI + + +PQ NGV ER I T+ + AR M+ G L FW EA+ TA ++ NRI R +++T Y +W +KP +K+ +F
Subjt: ---EQKFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRP--GTTQTNYGLWRRRKPNIKYFHIF
Query: ESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD-----KNLVPVDKDSESSN
+ + + + K+D KS IF+GY N +++++ + + + +VV+D+ + +R +F D+ +K+ + ++ + +ES
Subjt: ESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD-----KNLVPVDKDSESSN
Query: LDPKESVSDQIKCSSK
D + + D + +K
Subjt: LDPKESVSDQIKCSSK
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.9e-23 | 24.22 | Show/hide |
Query: FNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMKSTYKNDAYVV--KIKESDENVAQSISLLTKQFGKVLRRWDKRGGYRD
FN + + N L KI +E+ +L LP +D TTI HG T++ A ++ K+++ EN Q +L+T+ G+ +R +
Subjt: FNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMKSTYKNDAYVV--KIKESDENVAQSISLLTKQFGKVLRRWDKRGGYRD
Query: NHVPPNQDSKSPNSHSNLNSQESGDKKIRCTECEGYGHYQAEWPNFLK-------RKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQV--TF
N+ KS N S + C C GH++ + PN K +KN +A + +++V + +EE L G P S V T
Subjt: NHVPPNQDSKSPNSHSNLNSQESGDKKIRCTECEGYGHYQAEWPNFLK-------RKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQV--TF
Query: PSDIVTDVAFERTREVKSDHHQLPL-EEIIEKLMEDNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDD-----MNKILSCGKQDVIPVKGLTTN
S T V R V D + + K+ + T LK + + I + D N+ K ++ KG+
Subjt: PSDIVTDVAFERTREVKSDHHQLPL-EEIIEKLMEDNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDD-----MNKILSCGKQDVIPVKGLTTN
Query: LI--NISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDSIAEVVVLEILPLSENYDSV--CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGL
+ +++C L+ ++D+ V + R + +++ + L +V CD C GKQ RVS + + ++L+L++ D+ G
Subjt: LI--NISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDSIAEVVVLEILPLSENYDSV--CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGL
Query: MQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTLCCQLQRE------------------QKFEDFCNLEGIMHEYSSSISPQRNGVVERKICT
M++ES+ G KY + +DD +R V ++ K F V Q ++RE ++FE++C+ GI HE + +PQ NGV ER T
Subjt: MQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTLCCQLQRE------------------QKFEDFCNLEGIMHEYSSSISPQRNGVVERKICT
Query: LQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNN
+ + R+ML L FW EA+ TAC++ NR P + +W ++ + + +F +E R K D KS IF+GY YR+++
Subjt: LQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNN
Query: RTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKDKN-LVP--VDKDSESSNLDPKESVSDQI
+ + S +VV +R+S + D +++K KN ++P V S S+N ES +D++
Subjt: RTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKDKN-LVP--VDKDSESSNLDPKESVSDQI
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.5e-08 | 21.43 | Show/hide |
Query: STDDMNKILSCGKQDVIPVKGLTTNLINISQLCD-QGLSVSFSKDKCIVTDTDNTIVMTRTRSFDD----------------------------------
ST K +++ V + NLI++ +LC+ G+SV F V D + + + + ++ D+
Subjt: STDDMNKILSCGKQDVIPVKGLTTNLINISQLCD-QGLSVSFSKDKCIVTDTDNTIVMTRTRSFDD----------------------------------
Query: --SIAEVVV----LEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
SI V+ L +L S + S C DC + K +V ++ + +T+ LE ++ D+ + S + +Y ++ VD F RYT + +++KS
Subjt: --SIAEVVV----LEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVC
Query: QTLCCQLQREQKFE------------------DFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
T L E +F+ ++ + GI H S +P+ NG+ ERK + + +L ++ +W A A ++ NR+
Subjt: QTLCCQLQREQKFE------------------DFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG
Query: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDH
++ + PN +F C + K D KS +FLGYS AY + +T S +V D++
Subjt: TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDH
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.7e-11 | 24.02 | Show/hide |
Query: CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKS---NTFHVCQTLCCQLQREQKFE---------
C DC + K +V + + ++K LE ++ D+ + S++ +Y ++ VD F RYT + +++KS +TF + ++L E +F+
Subjt: CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKS---NTFHVCQTLCCQLQREQKFE---------
Query: ---------DFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQTNYGLWRRRKPNIKYFHIFE
D+ + GI H S +P+ NG+ ERK + +M +L ++ +W A + A ++ NR+ Q+ + + PN + +F
Subjt: ---------DFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQTNYGLWRRRKPNIKYFHIFE
Query: SICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDD
C R K + KS F+GYS AY + T S +V D+
Subjt: SICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDD
|
|
