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Clc02G10170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G10170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationClcChr02:16101681..16103088
RNA-Seq ExpressionClc02G10170
SyntenyClc02G10170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]6.1e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]1.8e-3439.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS+ ++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]3.0e-3439Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSFR-------------------------------------------THHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F+                                           + H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSFR-------------------------------------------THHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+  G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

KAA0050296.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-3439.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LSD+++ELVQEN ++T V K++IE++ ++F                                           R+ H  S   STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAETE+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+L++  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]8.0e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

TrEMBL top hitse value%identityAlignment
A0A5A7TAA5 Uncharacterized protein3.0e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

A0A5A7THC0 Reverse transcriptase domain-containing protein8.6e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS+ ++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

A0A5A7VEX8 Polyprotein3.9e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F                                           R+ H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

A0A5D3BWR0 Reverse transcriptase5.0e-3539.42Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG
        VQ  +G+LSD+++ELVQEN ++T V K++IE++ ++F                                           R+ H  S   STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSF-------------------------------------------RTHHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAETE+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+ +G IL+YV+EF +L+L++  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

A0A5D3D3V4 Retrotrans_gag domain-containing protein1.5e-3439Show/hide
Query:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSFR-------------------------------------------THHKASSPVSTSYTSAAQG
        VQ  +G+LS++++ELVQEN ++T V K++IED+ ++F+                                           + H  S+  STS      G
Subjt:  VQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSFR-------------------------------------------THHKASSPVSTSYTSAAQG

Query:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW
        T ++KVPKP+ +NG  NAT+V NFLFGLERYF ALG                                        FK ELRKHFVPHNAE E+RGKLR 
Subjt:  TPSLKVPKPNTFNGACNATIVGNFLFGLERYFDALG----------------------------------------FKIELRKHFVPHNAETEARGKLRW

Query:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA
        L+  G IL+YV+EF +L+LE+  L +K+ALF FKDGLKDWA
Subjt:  LQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCCATCGGCAAACTTAGGCACTCCCTCTTTGGCAGACTCAGACCATAGGCACGTGCAAGCCACACTTGGCAAGCTAAGTGACGACTATGATGAGCTTGTCCAAGA
GAACCCCAAGGTGACAGTCGTTGTTAAGCAACTCATAGAAGACCTCGATCAGTCATTTCGAACTCACCATAAAGCTAGTAGCCCGGTATCTACTAGTTACACCTCTGCTG
CACAAGGGACTCCTAGCCTCAAAGTTCCTAAGCCCAACACCTTCAATGGTGCATGCAACGCCACAATAGTGGGCAACTTCCTGTTTGGGCTGGAACGCTATTTCGATGCC
CTAGGGTTTAAGATTGAGCTTCGCAAGCACTTTGTGCCCCACAATGCAGAAACAGAAGCTAGAGGCAAGCTAAGGTGGTTGCAACAATCCGGTGGCATCCTTAATTATGT
CGAGGAGTTCATGTCCCTAATACTCGAAGTGGAGGGCTTGCTTGACAAGGATGCACTCTTCTACTTCAAGGACGGACTAAAAGATTGGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCCATCGGCAAACTTAGGCACTCCCTCTTTGGCAGACTCAGACCATAGGCACGTGCAAGCCACACTTGGCAAGCTAAGTGACGACTATGATGAGCTTGTCCAAGA
GAACCCCAAGGTGACAGTCGTTGTTAAGCAACTCATAGAAGACCTCGATCAGTCATTTCGAACTCACCATAAAGCTAGTAGCCCGGTATCTACTAGTTACACCTCTGCTG
CACAAGGGACTCCTAGCCTCAAAGTTCCTAAGCCCAACACCTTCAATGGTGCATGCAACGCCACAATAGTGGGCAACTTCCTGTTTGGGCTGGAACGCTATTTCGATGCC
CTAGGGTTTAAGATTGAGCTTCGCAAGCACTTTGTGCCCCACAATGCAGAAACAGAAGCTAGAGGCAAGCTAAGGTGGTTGCAACAATCCGGTGGCATCCTTAATTATGT
CGAGGAGTTCATGTCCCTAATACTCGAAGTGGAGGGCTTGCTTGACAAGGATGCACTCTTCTACTTCAAGGACGGACTAAAAGATTGGGCCTGA
Protein sequenceShow/hide protein sequence
MRPSANLGTPSLADSDHRHVQATLGKLSDDYDELVQENPKVTVVVKQLIEDLDQSFRTHHKASSPVSTSYTSAAQGTPSLKVPKPNTFNGACNATIVGNFLFGLERYFDA
LGFKIELRKHFVPHNAETEARGKLRWLQQSGGILNYVEEFMSLILEVEGLLDKDALFYFKDGLKDWA