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Clc02G10430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G10430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr02:16474607..16478596
RNA-Seq ExpressionClc02G10430
SyntenyClc02G10430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIN08325.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]4.4e-3154.48Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IG SPY L+FGKACH PVELEH AY AI+KLN D + A EK LL++N+++EFR QAYENAK YKE+T RW                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR
              GKLK+HW G F I +V PHG VEL+  N R  FKVNA R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR

WP_217833156.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.3e-4065.28Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IGTS YRLVFGKACHLPVELEHRAY AIKKLNMDF+KA EK LL++N+MEEFRAQAYENAK YK+RT RW                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR
              GKL+T W G F+IVKVSPHG VELQGN+ TTFKVN  R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR

XP_012842899.1 PREDICTED: uncharacterized protein LOC105963074 [Erythranthe guttata]4.4e-3152.08Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IG SPY+LV+GKACHLPVELEHRAY A+KKLN D   A ++ LL++N+MEEFR  AYENAK YKE+T +W                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR
              GKLK+ W G FV++ V+P GV+E++G D  +FKVN  R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR

XP_030494742.1 uncharacterized protein LOC115710519 [Cannabis sativa]5.8e-3153.47Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IG SP RLVFGKACHLPVELEH+A+ A+K LNM+ K A EK LL++N++EEFR +AYENAK YKERT +W                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR
              GK+K+ W G F +VKV P+G VEL+G+   TFKVN  R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQGNDRTTFKVNAPR

XP_030497942.1 uncharacterized protein LOC115713594 [Cannabis sativa]7.3e-3463.11Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW-----GKLKTHWWGLFVIVKV
        AYRT FK  IG SPYRLV+GKACHLPV+LEH+AY A K LNMD K A EK LL++N++EEFR +AYENAK YKERT +W     GKLK+ W G F +VK 
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW-----GKLKTHWWGLFVIVKV

Query:  SPHGVVELQGNDRTTFKVNAPR
         P+G VEL+G    TFKVN  R
Subjt:  SPHGVVELQGNDRTTFKVNAPR

TrEMBL top hitse value%identityAlignment
A0A1S3YII4 uncharacterized protein LOC1077766423.6e-3154.11Show/hide
Query:  RAYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW--------------------
        RAYRTA+K  IG SPYRLV+GKACHLP+ELEH+AY AIKKLNMD     EK LL+++++EEFR  AYENAK YKE+T RW                    
Subjt:  RAYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW--------------------

Query:  -------GKLKTHWWGLFVIVKVSPHGVVELQGNDRT-TFKVNAPR
               GKLK+ W G FV+V V PHGV+EL+    T TF VNA R
Subjt:  -------GKLKTHWWGLFVIVKVSPHGVVELQGNDRT-TFKVNAPR

A0A1S4CED8 uncharacterized protein LOC1078180742.4e-3062.18Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW----GKLKTHWWGLFVIVKVS
        AYRTA++  IGT PY+LV+GKACHLPVELEH+AY AIKKLNMD   A +K LL++N+++EFR  AYENAKFYKE T R     GKLK+ W G FV+V V 
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW----GKLKTHWWGLFVIVKVS

Query:  PHGVVELQGNDRT-TFKVN
        PHG VEL+    + TF VN
Subjt:  PHGVVELQGNDRT-TFKVN

A0A2G9G6G2 Reverse transcriptase1.1e-3053.1Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTA+K  IG SPY L+FGKACHLPVELEH AY AI KLN D + A EK LL++N+++EFR  AYENAK YKE+T RW                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR
              GKLK+ W+GLF I +V PHG VEL+  N R  FK+NA R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR

A0A2G9GSZ3 DNA-directed DNA polymerase2.1e-3154.48Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IG SPY L+FGKACH PVELEH AY AI+KLN D + A EK LL++N+++EFR QAYENAK YKE+T RW                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR
              GKLK+HW G F I +V PHG VEL+  N R  FKVNA R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR

A0A2G9H400 Reverse transcriptase3.6e-3155.17Show/hide
Query:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------
        AYRTAFK  IG SPY LVFGKACHLPVELEH AY AI+KLN D + A EK LL++N+++EFR QAYENAK YKE+T RW                     
Subjt:  AYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRW---------------------

Query:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR
              GKLK+ W G F I +V PHG VEL+  N R  FKVNA R
Subjt:  ------GKLKTHWWGLFVIVKVSPHGVVELQG-NDRTTFKVNAPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCACCCTCACTTGGACACAAGGTCCAACTTGGGCGCATCACCTAACTTTGGACGCCGCGTTCACCTTGGACATTATGTTTGTCCTCAACGCAAAGCCGACCCCTT
TCAACGCAAGACAACTTCTTTACATAAAATAGCTAAGTTGTCAAATACCTTCTTTCTTGGCCACATACTCCTACTACGGACGTCCTTGCTGCCTTCCTCTTCTCTTTTCT
CTCCAGAATTCTTCTTTGAGAGTCATCAGTCGCTCATTTTCCCTCAAGGGACCCCATGCATTATGTATGCTTATGATTATCTTGAGATCAAGTTTTATTTGGGTATAGGT
TATGCTTCCAGGGATAGCAGGGCCTACCGTACAGCTTTCAAAATCCTAATAGGTACTTCACCATATAGATTGGTGTTTGGAAAAGCTTGTCATTTACCAGTAGAGCTCGA
ACATAGAGCTTATTTGGCCATTAAGAAGCTGAACATGGACTTTAAGAAAGCTCGTGAGAAGCACCTCTTGAAAATAAATAAAATGGAGGAGTTCCGTGCTCAAGCTTATG
AGAATGCCAAATTCTACAAGGAGCGCACCATTAGATGGGGTAAACTTAAGACACATTGGTGGGGACTCTTTGTCATTGTGAAGGTGTCCCCACATGGAGTAGTGGAGTTA
CAAGGCAATGATAGAACAACCTTCAAAGTGAATGCGCCGCGACGCTATCTTGCGTTCACCAAGTATGCGTCGAAGCAGCGCCTTCCCAGCGCCGCGTTGCTGCTCTGCGT
CCATGCTGATGCGTTTCAGCCTCAACGTCGCGGCAGCGCTGCCTTAGTGCCGCGGCGCATCATGCGTTTCAAGCAAGGATGCGTTTTTCAGCACTTTTTCTCCATATTCT
TGCTCGGTTTTGATCTTTCAGTCGTTTCTTCTAATTTTCCTCGTTTTAACCTGAAAATCACTAGCAAACAAGTGAAATCTAATATAAAACTCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCACCCTCACTTGGACACAAGGTCCAACTTGGGCGCATCACCTAACTTTGGACGCCGCGTTCACCTTGGACATTATGTTTGTCCTCAACGCAAAGCCGACCCCTT
TCAACGCAAGACAACTTCTTTACATAAAATAGCTAAGTTGTCAAATACCTTCTTTCTTGGCCACATACTCCTACTACGGACGTCCTTGCTGCCTTCCTCTTCTCTTTTCT
CTCCAGAATTCTTCTTTGAGAGTCATCAGTCGCTCATTTTCCCTCAAGGGACCCCATGCATTATGTATGCTTATGATTATCTTGAGATCAAGTTTTATTTGGGTATAGGT
TATGCTTCCAGGGATAGCAGGGCCTACCGTACAGCTTTCAAAATCCTAATAGGTACTTCACCATATAGATTGGTGTTTGGAAAAGCTTGTCATTTACCAGTAGAGCTCGA
ACATAGAGCTTATTTGGCCATTAAGAAGCTGAACATGGACTTTAAGAAAGCTCGTGAGAAGCACCTCTTGAAAATAAATAAAATGGAGGAGTTCCGTGCTCAAGCTTATG
AGAATGCCAAATTCTACAAGGAGCGCACCATTAGATGGGGTAAACTTAAGACACATTGGTGGGGACTCTTTGTCATTGTGAAGGTGTCCCCACATGGAGTAGTGGAGTTA
CAAGGCAATGATAGAACAACCTTCAAAGTGAATGCGCCGCGACGCTATCTTGCGTTCACCAAGTATGCGTCGAAGCAGCGCCTTCCCAGCGCCGCGTTGCTGCTCTGCGT
CCATGCTGATGCGTTTCAGCCTCAACGTCGCGGCAGCGCTGCCTTAGTGCCGCGGCGCATCATGCGTTTCAAGCAAGGATGCGTTTTTCAGCACTTTTTCTCCATATTCT
TGCTCGGTTTTGATCTTTCAGTCGTTTCTTCTAATTTTCCTCGTTTTAACCTGAAAATCACTAGCAAACAAGTGAAATCTAATATAAAACTCCCTTAA
Protein sequenceShow/hide protein sequence
MCHPHLDTRSNLGASPNFGRRVHLGHYVCPQRKADPFQRKTTSLHKIAKLSNTFFLGHILLLRTSLLPSSSLFSPEFFFESHQSLIFPQGTPCIMYAYDYLEIKFYLGIG
YASRDSRAYRTAFKILIGTSPYRLVFGKACHLPVELEHRAYLAIKKLNMDFKKAREKHLLKINKMEEFRAQAYENAKFYKERTIRWGKLKTHWWGLFVIVKVSPHGVVEL
QGNDRTTFKVNAPRRYLAFTKYASKQRLPSAALLLCVHADAFQPQRRGSAALVPRRIMRFKQGCVFQHFFSIFLLGFDLSVVSSNFPRFNLKITSKQVKSNIKLP