; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc02G10520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G10520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr02:16498563..16499936
RNA-Seq ExpressionClc02G10520
SyntenyClc02G10520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833202.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.5e-6671.98Show/hide
Query:  LETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQ
        +ETDAT+NL+AQ+ANMTS+LQT+ L NQG +VA+M+A++ +N TASV C QCG GHLYDMCPYN QS+C VQNNPY +TYN GWRNHL+FGWG NQQQTQ
Subjt:  LETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQ

Query:  RAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAYRNFEVQMIQIAKALKNKKKG
         AEQQPQRGNPPGFNQ NQGQYHQ+ RD QADAS+S YS+ESLLRE LST DAMFQSQ  A  N EV MIQ+  AL+N+++G
Subjt:  RAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAYRNFEVQMIQIAKALKNKKKG

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]3.3e-3239.69Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQ---PGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYD
        +Y+ A +I +R + N  +W        STNR  T     G+LE DA T L AQ+A+MT++L+ +   N G SV    A+      A + C  CG GH ++
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQ---PGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYD

Query:  MCPYNLQSICSV-------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSD
         CP N  S+C V        NNPY  +YN  W++H +F WGG    +  A+ Q ++  PPGF+Q  +    Q S   Q   +SSL   ESL+R++++ +D
Subjt:  MCPYNLQSICSV-------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSD

Query:  AMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQGETLLSGKI
        A+ QSQ  + RN EVQ+ Q+A  LKN+ +GTL S TE PR + KE C+  TL SGKI
Subjt:  AMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQGETLLSGKI

XP_030507648.1 uncharacterized protein LOC115722545 [Cannabis sativa]1.9e-3239.92Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQ---PGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYD
        +Y+ A +I +R + N  +W        STNR  T     G+LE DA T L AQ+A+MT++L+ +   N G SV    A+      A + C  CG GH ++
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQ---PGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYD

Query:  MCPYNLQSICSV-------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQ-QPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTS
         CP NL S+C V        NNPY  +YN  W++H +F WGG    +  A+Q Q ++  PPGF+Q  Q + HQ          S   S+ESL+R++++ +
Subjt:  MCPYNLQSICSV-------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQ-QPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTS

Query:  DAMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQGETLLSGKI
        DA+ QSQ  + RN EVQ+ Q+A  LKN+ +GTL S TE PR + KE C+  TL SGKI
Subjt:  DAMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQGETLLSGKI

XP_038902418.1 uncharacterized protein LOC120089063 [Benincasa hispida]1.9e-3237.45Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP
        TY+ A+ I DR S N+N+W+D+ Y  R +N+R+ +  ++  +  T LAAQ+A +TS+LQ + + NQG        L      A + C  CG  H  D CP
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP

Query:  YNLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAY
          LQ +C++Q N +  TYN GWR+H +FGWGGN    Q      + GN   FNQ+      Q  +  ++ +++S  S+ESLL++++  +DA+ Q+Q ++ 
Subjt:  YNLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAY

Query:  RNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKE
        RN E+Q+ Q+A   +N+  GTL S +E P  N KE
Subjt:  RNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKE

XP_038902511.1 uncharacterized protein LOC120089170 [Benincasa hispida]4.3e-4040.57Show/hide
Query:  YSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPY
        Y+ A+ I DR   N ++WVD GY  R   RR+ +  ++  D  T LAAQ+A +TS+LQ + + N G         + +   A + C+QCG GH  +MCP 
Subjt:  YSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPY

Query:  NLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQ---PQRGNPPGFNQWNQGQYHQ----YSRDLQADASSSLYSMESLLREHLSTSDAMFQ
        N Q++ S+QNNPY  TYN GWRNH +F WGGN  Q  +   Q     RGNPP F+Q     +HQ    +++   ++ S++  S+E+LL++++  +DA+ Q
Subjt:  NLQSICSVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQ---PQRGNPPGFNQWNQGQYHQ----YSRDLQADASSSLYSMESLLREHLSTSDAMFQ

Query:  SQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQ
        SQ ++ RN EVQM Q+A  L+N+  G + S +E P  N KEQCQ
Subjt:  SQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKEQCQ

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129457.4e-2235.34Show/hide
Query:  AEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQ
        A ++ +  + N  +W  E    RS +R+    G  E DA   L  Q+A ++  L TL              +HA+   + V C  CG  H YD CPYN +
Subjt:  AEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQ

Query:  SICSV------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTT
        S+  V      QNNPY  TYN GWRNH +F W  N          P+   PPGF Q  + Q  +    L           E LL +++S +DA+ QSQ  
Subjt:  SICSV------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTT

Query:  AYRNFEVQMIQIAKALKNKKKGTLLSMTEV-PRGNSKEQCQGETLLSGK
        + RN E Q+ Q+A ++ N+ +G+L S T++ P+G  KEQCQ  TL SGK
Subjt:  AYRNFEVQMIQIAKALKNKKKGTLLSMTEV-PRGNSKEQCQGETLLSGK

A0A6J1BDW4 uncharacterized protein LOC1104265841.5e-2237.24Show/hide
Query:  NINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQSICSV-----
        N  +W  E    RS +R+    G  E DA   L  Q+A ++  L TL              +HA+   + V C  CG  H YD CPYN +S+  V     
Subjt:  NINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQSICSV-----

Query:  -QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAYRNFEVQMI
         QNNPY  TYN GWRNH +F W  N          P+   PPGF        HQ +R   ++  S L   E LL +++S +DA+ QSQ  + RN E Q+ 
Subjt:  -QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAYRNFEVQMI

Query:  QIAKALKNKKKGTLLSMTEV-PRGNSKEQCQGETLLSGK
        Q+A ++ N+ +G+L S T++ P+G  KEQCQ  TL SGK
Subjt:  QIAKALKNKKKGTLLSMTEV-PRGNSKEQCQGETLLSGK

A0A6J1EEI2 uncharacterized protein LOC1114333947.4e-2236.17Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP
        TY+ A +I +R + N  +W D     RS   R+T+ G+LE DA +++ AQLA++T++LQ L L       A ++ +  +N TA+  C  CG  H +D CP
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP

Query:  YNLQSICSV---------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQA----DASSSL-YSMESLLREHL
         N  SI  V         +NNP+  TYN GWRNH +F W G  Q +   +  P+   PPGF   NQ  Y     + Q      A  +L  S+ESL++E++
Subjt:  YNLQSICSV---------QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQA----DASSSL-YSMESLLREHL

Query:  STSDAMFQSQTTAYRNFEVQ--MIQIAKALKNKKK
        + +D + Q+Q  + RN EVQ    Q  KA  N K+
Subjt:  STSDAMFQSQTTAYRNFEVQ--MIQIAKALKNKKK

A0A6J1EQ90 uncharacterized protein LOC1114364115.1e-2336.2Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP
        TY+ A +I +R + N  +W D     RS   R+T+ G+LE DA +++ AQLA++T++LQ L L       A ++   A+N TA+  C  CG  H +D CP
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP

Query:  YNLQSIC---------SVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADAS-----SSLYSMESLLREHL
         N  SI          +++NNP+  TYN GWRNH +F W G  Q     +  P+   P GF   NQ  Y     + Q   +     +S  S+ESL++E++
Subjt:  YNLQSIC---------SVQNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADAS-----SSLYSMESLLREHL

Query:  STSDAMFQSQTTAYRNFEVQM
        + +DA+ QSQ  + RN EVQ+
Subjt:  STSDAMFQSQTTAYRNFEVQM

A0A6J1G7Q6 uncharacterized protein LOC1114515982.3e-2335.34Show/hide
Query:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP
        TY+ A +I +R + N  +WVD     RS   ++T+  +LE DA +++ AQLA+MT++LQ L         A  +    M  TA+  C  CG  H +D CP
Subjt:  TYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCP

Query:  YNLQSICSVQN---------NPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYS-----MESLLREHL
         N  SI  V N         NP   TYN GWRNH +F   G  Q +   +  P+   PPGF   NQ  Y       Q + +S         +ESL++E++
Subjt:  YNLQSICSVQN---------NPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYS-----MESLLREHL

Query:  STSDAMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKE
        + +DA+ QSQ  + RN EVQ+ Q+A  L+N+  G L + TE+P+    E
Subjt:  STSDAMFQSQTTAYRNFEVQMIQIAKALKNKKKGTLLSMTEVPRGNSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTACTCATATGCCGAAGATATTTTCGATAGAACTTCATGGAACATCAATGAGTGGGTGGACGAAGGATATGAATTTCGCTCCACCAATAGAAGGCAAACACAACC
TGGAATGCTCGAAACTGATGCGACCACTAACCTGGCAGCGCAGCTCGCCAATATGACATCCATGCTGCAAACACTAGTATTAAAAAATCAAGGTAGATCAGTTGCTGCGA
TGAACGCATTGCACGCGATGAACCCGACAGCATCTGTAGACTGCTCGCAGTGTGGTACGGGACACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATTTGCAGTGTT
CAAAACAACCCCTACGGTGAGACATACAATTCGGGTTGGAGGAACCACCTTGACTTCGGATGGGGTGGGAATCAACAACAAACGCAGAGGGCTGAGCAGCAGCCGCAGAG
AGGCAACCCTCCTGGTTTCAACCAATGGAATCAAGGCCAGTATCATCAGTATTCGAGGGATCTGCAAGCAGACGCATCATCATCATTGTATTCCATGGAATCTCTTTTAC
GAGAACATTTATCTACAAGCGATGCGATGTTCCAAAGCCAAACCACTGCATATCGCAATTTCGAAGTTCAAATGATTCAAATTGCAAAGGCGCTCAAAAATAAAAAGAAA
GGAACATTGCTAAGTATGACCGAAGTTCCAAGAGGGAACTCCAAAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGCGTATAATGAGGGGAC
ACAAGGAAACTTGCAACCCCTAAACGCTCCAACAAGTCAACCGATGGAGAGCACCGTGCATAATGTCCATCATCCATCATCTTCCACCGAATCAGAAGAAGAGGAAAATA
TAGAGCGGAGAGAAAAAGCAACGCAGGCAGAACCTGCGTCTGTATATGAAGATACCACTTCTGGACGCGTCCTAATTGACATCCAAGAAGAAATCTCAACGCCCCGCGTG
GAGGATCAGGTAAAATTTAATGTAGTTAACGCGTTGAACGATCTTAATCATTTTCAATTTTGTCTAATGAACGCAGATATCAATGAAAAGACAAAACCTGTGAACGCGGC
GTTGAGAGATGAAATCCTCCAGGACGGTGAAGATGAAAAAGATGAAATCAAATTACTCTCCGATCGACAATTAGAGAAATCAGACCGGAGCAATAGATCTGCGGCGAAGA
TCGAGCCGCTAGTAAAAGAGCCTTCAACGCATGAGCTACAAACCAGACCAACGCATTCCAAGTATGCGCACTTGAGGAAGGTCATAATGTACTTCATTGTCTCCTCTGCG
TTGAACCCTGAACGCGATAAAGGCTCTAACGACCAACGCAAGTGTAATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTACTCATATGCCGAAGATATTTTCGATAGAACTTCATGGAACATCAATGAGTGGGTGGACGAAGGATATGAATTTCGCTCCACCAATAGAAGGCAAACACAACC
TGGAATGCTCGAAACTGATGCGACCACTAACCTGGCAGCGCAGCTCGCCAATATGACATCCATGCTGCAAACACTAGTATTAAAAAATCAAGGTAGATCAGTTGCTGCGA
TGAACGCATTGCACGCGATGAACCCGACAGCATCTGTAGACTGCTCGCAGTGTGGTACGGGACACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATTTGCAGTGTT
CAAAACAACCCCTACGGTGAGACATACAATTCGGGTTGGAGGAACCACCTTGACTTCGGATGGGGTGGGAATCAACAACAAACGCAGAGGGCTGAGCAGCAGCCGCAGAG
AGGCAACCCTCCTGGTTTCAACCAATGGAATCAAGGCCAGTATCATCAGTATTCGAGGGATCTGCAAGCAGACGCATCATCATCATTGTATTCCATGGAATCTCTTTTAC
GAGAACATTTATCTACAAGCGATGCGATGTTCCAAAGCCAAACCACTGCATATCGCAATTTCGAAGTTCAAATGATTCAAATTGCAAAGGCGCTCAAAAATAAAAAGAAA
GGAACATTGCTAAGTATGACCGAAGTTCCAAGAGGGAACTCCAAAGAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCACAGCGTATAATGAGGGGAC
ACAAGGAAACTTGCAACCCCTAAACGCTCCAACAAGTCAACCGATGGAGAGCACCGTGCATAATGTCCATCATCCATCATCTTCCACCGAATCAGAAGAAGAGGAAAATA
TAGAGCGGAGAGAAAAAGCAACGCAGGCAGAACCTGCGTCTGTATATGAAGATACCACTTCTGGACGCGTCCTAATTGACATCCAAGAAGAAATCTCAACGCCCCGCGTG
GAGGATCAGGTAAAATTTAATGTAGTTAACGCGTTGAACGATCTTAATCATTTTCAATTTTGTCTAATGAACGCAGATATCAATGAAAAGACAAAACCTGTGAACGCGGC
GTTGAGAGATGAAATCCTCCAGGACGGTGAAGATGAAAAAGATGAAATCAAATTACTCTCCGATCGACAATTAGAGAAATCAGACCGGAGCAATAGATCTGCGGCGAAGA
TCGAGCCGCTAGTAAAAGAGCCTTCAACGCATGAGCTACAAACCAGACCAACGCATTCCAAGTATGCGCACTTGAGGAAGGTCATAATGTACTTCATTGTCTCCTCTGCG
TTGAACCCTGAACGCGATAAAGGCTCTAACGACCAACGCAAGTGTAATAACTGA
Protein sequenceShow/hide protein sequence
MTYSYAEDIFDRTSWNINEWVDEGYEFRSTNRRQTQPGMLETDATTNLAAQLANMTSMLQTLVLKNQGRSVAAMNALHAMNPTASVDCSQCGTGHLYDMCPYNLQSICSV
QNNPYGETYNSGWRNHLDFGWGGNQQQTQRAEQQPQRGNPPGFNQWNQGQYHQYSRDLQADASSSLYSMESLLREHLSTSDAMFQSQTTAYRNFEVQMIQIAKALKNKKK
GTLLSMTEVPRGNSKEQCQGETLLSGKINPTAYNEGTQGNLQPLNAPTSQPMESTVHNVHHPSSSTESEEEENIERREKATQAEPASVYEDTTSGRVLIDIQEEISTPRV
EDQVKFNVVNALNDLNHFQFCLMNADINEKTKPVNAALRDEILQDGEDEKDEIKLLSDRQLEKSDRSNRSAAKIEPLVKEPSTHELQTRPTHSKYAHLRKVIMYFIVSSA
LNPERDKGSNDQRKCNN