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Clc02G10530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc02G10530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationClcChr02:16506638..16506919
RNA-Seq ExpressionClc02G10530
SyntenyClc02G10530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.8e-0941.76Show/hide
Query:  NLLPLDLEIDRTYRRNLRASLNQTTEMAEE----IPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        +++P+D EI+RT R   R   N+   MAEE    +P+ ++DY +P +  +   IM  PIN NNFELKP LI M ++  F G   +DP+ HL
Subjt:  NLLPLDLEIDRTYRRNLRASLNQTTEMAEE----IPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

PNX93836.1 hypothetical protein L195_g016998, partial [Trifolium pratense]3.0e-0945.16Show/hide
Query:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        + R    +L  D EI+RT RRN RA   ++  MAE   + +RDYF P+   +   I+N P+  NNFELKPGLIQM +   F+G   EDP+ HL
Subjt:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.1e-4396.77Show/hide
Query:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        MPRDNTNLLPLD EIDRTYRRNLRA LNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAF+GRTNEDPHKHL
Subjt:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]3.0e-0952.86Show/hide
Query:  RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        R  L Q  +M       IRDY QP  P +  GI+N+PIN NN ELKPGLIQM RE  F+G   EDP+ HL
Subjt:  RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

XP_042465896.1 uncharacterized protein LOC122048392 [Zingiber officinale]1.8e-0942.05Show/hide
Query:  LLPLDLEIDRTY--RRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        LLP DLEIDRT+  +RNL+ +     E +E   K ++DY  P     +  I   PI  NNFE+KP +I M ++  F G  +EDP+ HL
Subjt:  LLPLDLEIDRTY--RRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

TrEMBL top hitse value%identityAlignment
A0A2K3MSV7 Uncharacterized protein (Fragment)1.5e-0945.16Show/hide
Query:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        + R    +L  D EI+RT RRN RA   ++  MAE   + +RDYF P+   +   I+N P+  NNFELKPGLIQM +   F+G   EDP+ HL
Subjt:  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

A0A3S3N117 Retrotrans_gag domain-containing protein3.6e-0839.36Show/hide
Query:  NTNLLPLDLEIDRTYRRNLRASLNQT----TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQM-ARELAFKGRTNEDPHKHL
        N NL+PLD EI+RT RR  +    Q+    TEM E+  +++ DY  P +  +   I    I  NNFE+KP +IQM A  + F G  ++DP+ H+
Subjt:  NTNLLPLDLEIDRTYRRNLRASLNQT----TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQM-ARELAFKGRTNEDPHKHL

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129459.5e-0937.61Show/hide
Query:  RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGR
        R+N NL+P D +I+RT+RR+ R     A+LNQT              +  E  +A+RDY  P +      I    IN NNFE+KP  IQM +  + F G 
Subjt:  RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGR

Query:  TNEDPHKHL
         ++DP+ HL
Subjt:  TNEDPHKHL

A0A6J0ZYV0 uncharacterized protein LOC1104134131.2e-0837.61Show/hide
Query:  RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGR
        R+N NL+P D +I+RT+RR+ R     A+LNQT              +  E  +A+RDY  P +      I    IN NNFE+KP  IQM +  + F G 
Subjt:  RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGR

Query:  TNEDPHKHL
         ++DP+ HL
Subjt:  TNEDPHKHL

A0A6J1DU19 uncharacterized protein LOC1110243611.5e-0952.86Show/hide
Query:  RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL
        R  L Q  +M       IRDY QP  P +  GI+N+PIN NN ELKPGLIQM RE  F+G   EDP+ HL
Subjt:  RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTGATAATACTAACCTCCTCCCTCTTGATCTCGAGATTGATAGGACTTATAGACGAAATCTAAGGGCTTCACTCAATCAAACTACGGAGATGGCGGAGGAGAT
ACCCAAGGCAATTCGAGACTACTTCCAACCCACGTTACCGGCAAGTCAACCCGGAATAATGAATGTGCCTATCAATGTCAACAATTTTGAGTTGAAACCGGGATTGATCC
AAATGGCTAGAGAGCTAGCCTTTAAAGGAAGAACCAATGAAGATCCTCACAAGCACTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGTGATAATACTAACCTCCTCCCTCTTGATCTCGAGATTGATAGGACTTATAGACGAAATCTAAGGGCTTCACTCAATCAAACTACGGAGATGGCGGAGGAGAT
ACCCAAGGCAATTCGAGACTACTTCCAACCCACGTTACCGGCAAGTCAACCCGGAATAATGAATGTGCCTATCAATGTCAACAATTTTGAGTTGAAACCGGGATTGATCC
AAATGGCTAGAGAGCTAGCCTTTAAAGGAAGAACCAATGAAGATCCTCACAAGCACTTATAA
Protein sequenceShow/hide protein sequence
MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL